Variant report

Variant	rs10831073
Chromosome Location	chr11:93343188-93343189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10160552	0.89[ASW][hapmap];1.00[YRI][hapmap]
rs10831070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831078	0.83[ASN][1000 genomes]
rs11020424	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020446	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12791296	0.82[ASN][1000 genomes]
rs2212439	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4396249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105804	0.89[ASW][hapmap];1.00[YRI][hapmap]
rs7123348	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7942374	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs10831073	C11orf54	cis	parietal	SCAN
rs10831073	MED17	cis	parietal	SCAN
rs10831073	C11orf54	cis	cerebellum	SCAN
rs10831073	MED17	cis	cerebellum	SCAN
rs10831073	ENDOD1	cis	cerebellum	SCAN
rs10831073	SCARNA9	cis	cerebellum	SCAN
rs10831073	SCARNA9	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93337800-93343200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:93342200-93343200	Weak transcription	Stomach Mucosa	stomach
3	chr11:93342600-93344200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:93342600-93344400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:93342800-93346800	Enhancers	Fetal Intestine Large	intestine
6	chr11:93343000-93343600	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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