Variant report

Variant	rs7942374
Chromosome Location	chr11:93326750-93326751
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10831070	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10831071	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10831073	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11020424	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11020446	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2155243	0.94[ASN][1000 genomes]
rs2212439	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4396249	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123348	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3413360	chr11:93325554-93328002	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93323200-93329000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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