Variant report

Variant	rs10832400
Chromosome Location	chr11:15329304-15329305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10766230	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766234	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10766235	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832401	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023529	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12280216	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4497390	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4548599	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4622244	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4756805	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757307	0.85[EUR][1000 genomes]
rs61878035	0.89[ASN][1000 genomes]
rs7945587	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10832400	SAAL1	cis	parietal	SCAN
rs10832400	RRAS2	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15328200-15329600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:15328200-15329800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr11:15328400-15329600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:15328400-15329600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:15328400-15329800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:15328400-15329800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:15328400-15330000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:15328600-15329600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:15328600-15329800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:15328800-15329400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr11:15329000-15329600	Enhancers	Fetal Thymus	thymus
12	chr11:15329000-15329800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:15329000-15329800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:15329000-15329800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:15329000-15330000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:15329200-15329600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:15329200-15330000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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