Variant report

Variant	rs4622244
Chromosome Location	chr11:15388709-15388710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10766230	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10766234	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766235	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766240	0.90[ASN][1000 genomes]
rs10832400	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832401	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023529	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12280216	0.90[EUR][1000 genomes]
rs12794836	0.90[ASN][1000 genomes]
rs4237705	0.87[ASN][1000 genomes]
rs4497390	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4548599	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756805	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757307	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55735037	0.83[ASN][1000 genomes]
rs7105245	0.87[ASN][1000 genomes]
rs7111340	0.82[ASN][1000 genomes]
rs7125905	0.90[ASN][1000 genomes]
rs7945587	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1044103	chr11:15345545-15390081	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15385000-15388800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:15387400-15389200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:15387400-15389600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:15387600-15389000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:15388000-15390000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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