Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:15349014..15349930-chr11:15670842..15672081,7	MCF-7	breast:
2	chr11:15349381..15349887-chr11:16009845..16010736,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10766230	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10766234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766240	0.82[ASN][1000 genomes]
rs10832400	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832401	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832408	0.81[EUR][1000 genomes]
rs11023529	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280216	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12294231	0.81[EUR][1000 genomes]
rs12794836	0.82[ASN][1000 genomes]
rs4237705	0.85[ASN][1000 genomes]
rs4304758	0.80[EUR][1000 genomes]
rs4378368	0.80[EUR][1000 genomes]
rs4497390	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4548599	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4622244	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756805	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757307	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105245	0.85[ASN][1000 genomes]
rs7111340	0.85[ASN][1000 genomes]
rs7125905	0.82[ASN][1000 genomes]
rs7945587	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1044103	chr11:15345545-15390081	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15348400-15350600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:15348400-15350800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:15349400-15349800	Enhancers	Fetal Brain Male	brain
4	chr11:15349600-15350000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:15349600-15350000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:15349600-15350000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:15349600-15350000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:15349600-15350000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:15349600-15350000	Enhancers	Brain Germinal Matrix	brain
10	chr11:15349600-15350200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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