Variant report

Variant	rs10832590
Chromosome Location	chr11:16318856-16318857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16317353..16319622-chr11:16356044..16358376,2	K562	blood:
2	chr11:16318535..16320234-chr11:16433595..16435121,2	K562	blood:
3	chr11:16306276..16308117-chr11:16316163..16319101,2	K562	blood:
4	chr11:16312308..16315200-chr11:16317482..16320293,3	K562	blood:
5	chr11:16315419..16322751-chr11:16322783..16327004,9	K562	blood:
6	chr11:16316414..16319382-chr11:16625484..16628064,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1013305	0.85[JPT][hapmap]
rs10741696	0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs10832588	0.94[ASN][1000 genomes]
rs10832589	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11023887	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11023899	0.92[ASN][1000 genomes]
rs12225830	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs169859	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1807154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190929	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs2917899	0.87[AFR][1000 genomes]
rs2938282	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs297320	0.98[ASN][1000 genomes]
rs297343	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297344	0.93[YRI][hapmap];0.83[AFR][1000 genomes]
rs297346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297347	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs297348	0.87[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs297351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297352	0.98[ASN][1000 genomes]
rs297354	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297355	0.98[ASN][1000 genomes]
rs297356	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297357	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297358	0.98[ASN][1000 genomes]
rs297359	0.86[AFR][1000 genomes]
rs297360	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs297361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297364	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs297365	0.97[YRI][hapmap];0.88[AFR][1000 genomes]
rs297366	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs297367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs581210	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16302200-16321600	Weak transcription	Left Ventricle	heart
2	chr11:16313200-16319800	Enhancers	Fetal Heart	heart
3	chr11:16313400-16322200	Enhancers	Brain Germinal Matrix	brain
4	chr11:16314400-16319000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16315200-16351800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:16315400-16319000	Weak transcription	Fetal Lung	lung
7	chr11:16315400-16319400	Weak transcription	Small Intestine	intestine
8	chr11:16315600-16319000	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:16315600-16321600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:16315600-16322200	Weak transcription	Fetal Kidney	kidney
11	chr11:16317000-16319000	Enhancers	K562	blood
12	chr11:16317000-16320000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:16317200-16319400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:16317400-16327400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16317800-16319000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:16318200-16319000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:16318200-16319200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:16318200-16319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:16318400-16319200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:16318800-16319000	Enhancers	Fetal Brain Female	brain
21	chr11:16318800-16319800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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