Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16358051..16362948-chr11:16363302..16371497,10	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10832588	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832589	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832590	0.98[ASN][1000 genomes]
rs11023899	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12225830	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs169859	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1807154	0.98[ASN][1000 genomes]
rs2938282	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297343	0.98[ASN][1000 genomes]
rs297346	0.98[ASN][1000 genomes]
rs297347	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297348	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297351	0.98[ASN][1000 genomes]
rs297352	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297354	0.98[ASN][1000 genomes]
rs297355	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297356	0.98[ASN][1000 genomes]
rs297357	0.98[ASN][1000 genomes]
rs297358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs297361	0.98[ASN][1000 genomes]
rs297364	0.98[ASN][1000 genomes]
rs297367	0.98[ASN][1000 genomes]
rs581210	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16319400-16377600	Weak transcription	Psoas Muscle	Psoas
2	chr11:16345800-16367000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:16348800-16368600	Weak transcription	Brain Germinal Matrix	brain
4	chr11:16358200-16366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16358200-16368600	Weak transcription	Pancreas	Pancrea
6	chr11:16360200-16366400	Weak transcription	Fetal Intestine Large	intestine
7	chr11:16360200-16369200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:16361600-16366800	Weak transcription	K562	blood
9	chr11:16362400-16368800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:16362800-16363400	Enhancers	Fetal Intestine Small	intestine
11	chr11:16362800-16363600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:16362800-16364600	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr11:16362800-16367400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16362800-16368600	Weak transcription	Left Ventricle	heart
15	chr11:16362800-16369000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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