Variant report

Variant	rs581210
Chromosome Location	chr11:16380791-16380792
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16377809..16381179-chr11:16381397..16386476,5	K562	blood:
2	chr11:16378328..16381212-chr11:16385744..16387907,4	K562	blood:
3	chr11:16378664..16381135-chr11:16398247..16400656,3	K562	blood:
4	chr11:16368761..16370677-chr11:16378188..16383236,4	K562	blood:
5	chr11:16379429..16381172-chr11:16398247..16400946,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1013305	0.85[JPT][hapmap]
rs10832588	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832589	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832590	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs11023887	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs11023899	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12225830	1.00[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs169859	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1807154	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2938282	0.90[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297320	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs297343	0.84[ASN][1000 genomes]
rs297346	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs297347	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297348	0.87[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297351	0.89[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs297352	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297354	0.84[ASN][1000 genomes]
rs297355	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297356	0.84[ASN][1000 genomes]
rs297357	0.84[ASN][1000 genomes]
rs297358	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297360	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs297361	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs297364	0.84[ASN][1000 genomes]
rs297367	0.88[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16377600-16381600	Enhancers	Fetal Heart	heart
2	chr11:16377600-16382200	Enhancers	Fetal Intestine Small	intestine
3	chr11:16378000-16381000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16378400-16381600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr11:16378600-16381200	Enhancers	HepG2	liver
6	chr11:16378800-16381200	Enhancers	Fetal Intestine Large	intestine
7	chr11:16379000-16387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:16379200-16381800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:16379200-16387400	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:16379400-16380800	Enhancers	Liver	Liver
11	chr11:16379400-16381400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:16379800-16386600	Weak transcription	Fetal Brain Female	brain
13	chr11:16380400-16381600	Flanking Active TSS	K562	blood
14	chr11:16380400-16385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:16380400-16387200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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