Variant report

Variant	rs10832621
Chromosome Location	chr11:16512033-16512034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16510283..16512210-chr11:16515897..16517942,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1018143	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs10766321	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10766323	0.82[CHB][hapmap]
rs10832600	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs10832605	0.80[JPT][hapmap]
rs10832606	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10832608	0.82[CHB][hapmap]
rs11023944	0.82[CHB][hapmap]
rs11023945	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11023948	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11023959	0.81[ASN][1000 genomes]
rs11023960	0.81[ASN][1000 genomes]
rs11023962	0.82[ASN][1000 genomes]
rs11820804	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12277548	0.80[JPT][hapmap]
rs12293115	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs12418348	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503448	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1503449	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1875717	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs1910407	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2089050	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2134609	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs2174162	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs2174163	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs297324	0.82[CHB][hapmap]
rs297326	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs297334	0.95[JPT][hapmap]
rs297339	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs34138863	0.81[ASN][1000 genomes]
rs4757407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs626927	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs7121140	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7126577	0.81[ASN][1000 genomes]
rs7924783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7929425	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs7929629	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7945898	0.82[ASN][1000 genomes]
rs7951214	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs9667486	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16497200-16516600	Weak transcription	Left Ventricle	heart
2	chr11:16506200-16516200	Weak transcription	Right Ventricle	heart
3	chr11:16506200-16516400	Weak transcription	Psoas Muscle	Psoas
4	chr11:16506200-16517200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16509600-16516600	Weak transcription	Pancreas	Pancrea
6	chr11:16510400-16516200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16510400-16533000	Weak transcription	Fetal Heart	heart

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