Variant report

Variant	rs4757407
Chromosome Location	chr11:16514896-16514897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10766329	0.81[ASN][1000 genomes]
rs10832621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832627	0.81[ASN][1000 genomes]
rs11023962	0.81[ASN][1000 genomes]
rs11529132	0.81[ASN][1000 genomes]
rs11529582	0.81[ASN][1000 genomes]
rs12271656	0.81[ASN][1000 genomes]
rs12276256	0.81[ASN][1000 genomes]
rs12418348	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4492775	0.81[ASN][1000 genomes]
rs60439454	0.80[ASN][1000 genomes]
rs7117636	0.81[ASN][1000 genomes]
rs7126577	0.82[ASN][1000 genomes]
rs7924783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7945898	0.81[ASN][1000 genomes]
rs9667486	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16497200-16516600	Weak transcription	Left Ventricle	heart
2	chr11:16506200-16516200	Weak transcription	Right Ventricle	heart
3	chr11:16506200-16516400	Weak transcription	Psoas Muscle	Psoas
4	chr11:16506200-16517200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16509600-16516600	Weak transcription	Pancreas	Pancrea
6	chr11:16510400-16516200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16510400-16533000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links