Variant report

Variant	rs7945898
Chromosome Location	chr11:16508865-16508866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16508192..16511548-chr11:16513536..16517052,6	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10766326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766329	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766331	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10766337	0.85[EUR][1000 genomes]
rs10832613	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832614	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832615	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832621	0.82[ASN][1000 genomes]
rs10832622	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832627	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832628	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832629	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832635	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832637	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832639	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832640	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832642	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832643	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10832647	0.87[EUR][1000 genomes]
rs10832648	0.86[EUR][1000 genomes]
rs11023948	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11023959	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023981	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11023987	0.82[ASN][1000 genomes]
rs11023988	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11529132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11529582	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12270317	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12271656	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12276256	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12283896	0.87[EUR][1000 genomes]
rs12289091	0.88[EUR][1000 genomes]
rs12289093	0.84[EUR][1000 genomes]
rs12295506	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12574185	0.87[EUR][1000 genomes]
rs12575840	0.83[EUR][1000 genomes]
rs12576360	0.87[EUR][1000 genomes]
rs12794400	0.87[EUR][1000 genomes]
rs12806064	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34138863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34840028	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35223308	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4492775	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4511252	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4525190	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4536174	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4603269	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4757407	0.81[ASN][1000 genomes]
rs56965201	0.87[EUR][1000 genomes]
rs57248274	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60439454	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6486296	0.87[EUR][1000 genomes]
rs6486298	0.88[EUR][1000 genomes]
rs6486300	0.87[EUR][1000 genomes]
rs7103094	0.87[EUR][1000 genomes]
rs7112327	0.83[EUR][1000 genomes]
rs7115099	0.85[EUR][1000 genomes]
rs7117636	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7118874	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127280	0.85[EUR][1000 genomes]
rs7129286	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7924787	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7927904	0.87[EUR][1000 genomes]
rs7928885	0.86[EUR][1000 genomes]
rs7935041	0.88[EUR][1000 genomes]
rs7937139	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7942856	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7943712	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7945295	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948110	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9988855	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16495200-16510200	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:16497200-16516600	Weak transcription	Left Ventricle	heart
4	chr11:16498000-16509200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:16505000-16509200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16506200-16509600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16506200-16516200	Weak transcription	Right Ventricle	heart
8	chr11:16506200-16516400	Weak transcription	Psoas Muscle	Psoas
9	chr11:16506200-16517200	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links