Variant report

Variant	rs7112327
Chromosome Location	chr11:16538439-16538440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10766326	0.80[EUR][1000 genomes]
rs10766329	0.85[EUR][1000 genomes]
rs10766331	0.82[EUR][1000 genomes]
rs10832614	0.80[EUR][1000 genomes]
rs10832615	0.80[EUR][1000 genomes]
rs10832622	0.83[EUR][1000 genomes]
rs10832627	0.85[EUR][1000 genomes]
rs10832628	0.87[EUR][1000 genomes]
rs10832629	0.86[EUR][1000 genomes]
rs10832635	0.82[EUR][1000 genomes]
rs10832637	0.82[EUR][1000 genomes]
rs10832639	0.82[EUR][1000 genomes]
rs10832640	0.82[EUR][1000 genomes]
rs10832642	0.81[EUR][1000 genomes]
rs11023959	0.80[EUR][1000 genomes]
rs11023960	0.80[EUR][1000 genomes]
rs11023962	0.83[EUR][1000 genomes]
rs11023981	0.82[EUR][1000 genomes]
rs11529132	0.85[EUR][1000 genomes]
rs11529582	0.83[EUR][1000 genomes]
rs12270317	0.86[EUR][1000 genomes]
rs12271656	0.85[EUR][1000 genomes]
rs12276256	0.85[EUR][1000 genomes]
rs12295506	0.81[EUR][1000 genomes]
rs12806064	0.82[EUR][1000 genomes]
rs34138863	0.80[EUR][1000 genomes]
rs35223308	0.85[EUR][1000 genomes]
rs4492775	0.83[EUR][1000 genomes]
rs4525190	0.82[EUR][1000 genomes]
rs4536174	0.81[EUR][1000 genomes]
rs57248274	0.85[EUR][1000 genomes]
rs60439454	0.85[EUR][1000 genomes]
rs7117636	0.85[EUR][1000 genomes]
rs7118874	0.80[EUR][1000 genomes]
rs7126577	0.83[EUR][1000 genomes]
rs7129286	0.82[EUR][1000 genomes]
rs7924787	0.82[EUR][1000 genomes]
rs7937139	0.82[EUR][1000 genomes]
rs7943712	0.84[EUR][1000 genomes]
rs7945295	0.81[EUR][1000 genomes]
rs7945898	0.83[EUR][1000 genomes]
rs7948110	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761650	chr11:16530452-16541623	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16533800-16541200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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