Variant report

Variant	rs7937139
Chromosome Location	chr11:16559229-16559230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10766326	0.85[EUR][1000 genomes]
rs10766329	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10766331	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766337	0.88[EUR][1000 genomes]
rs10832613	0.84[EUR][1000 genomes]
rs10832614	0.85[EUR][1000 genomes]
rs10832615	0.85[EUR][1000 genomes]
rs10832622	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10832627	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832628	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832629	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832635	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832637	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832639	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832640	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832642	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832643	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832646	0.88[ASN][1000 genomes]
rs10832647	0.90[EUR][1000 genomes]
rs10832648	0.89[EUR][1000 genomes]
rs10832668	0.82[EUR][1000 genomes]
rs11023959	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023960	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023962	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11023981	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023987	1.00[ASN][1000 genomes]
rs11023988	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024012	0.80[AMR][1000 genomes]
rs11529132	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11529582	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12270317	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12271656	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12276256	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12283896	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12289091	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12289093	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12295506	0.92[EUR][1000 genomes]
rs12574185	0.90[EUR][1000 genomes]
rs12575840	0.85[EUR][1000 genomes]
rs12576360	0.90[EUR][1000 genomes]
rs12786848	0.87[ASN][1000 genomes]
rs12794400	0.90[EUR][1000 genomes]
rs12806064	0.93[EUR][1000 genomes]
rs34138863	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34840028	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35223308	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4359170	0.88[ASN][1000 genomes]
rs4492775	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4511252	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4525190	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4536174	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4578351	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4603269	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56965201	0.90[EUR][1000 genomes]
rs57248274	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60439454	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6486296	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6486298	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6486300	0.90[EUR][1000 genomes]
rs7103094	0.90[EUR][1000 genomes]
rs7111016	0.80[AMR][1000 genomes]
rs7112327	0.82[EUR][1000 genomes]
rs7115099	0.88[EUR][1000 genomes]
rs7117636	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118181	0.80[AMR][1000 genomes]
rs7118874	0.85[EUR][1000 genomes]
rs7126577	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127280	0.88[EUR][1000 genomes]
rs7129286	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7924787	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927904	0.90[EUR][1000 genomes]
rs7928885	0.89[EUR][1000 genomes]
rs7935041	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7942856	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943712	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7945295	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945898	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7948110	0.85[EUR][1000 genomes]
rs9988855	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16558400-16560200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16558800-16564000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:16558800-16565800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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