Variant report

Variant	rs56965201
Chromosome Location	chr11:16609025-16609026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16608501..16610129-chr11:16613605..16615410,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10741703	0.81[AFR][1000 genomes]
rs10741709	0.80[AMR][1000 genomes]
rs10766329	0.89[EUR][1000 genomes]
rs10766331	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766337	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832622	0.87[EUR][1000 genomes]
rs10832627	0.89[EUR][1000 genomes]
rs10832628	0.89[EUR][1000 genomes]
rs10832629	0.90[EUR][1000 genomes]
rs10832635	0.90[EUR][1000 genomes]
rs10832637	0.90[EUR][1000 genomes]
rs10832639	0.90[EUR][1000 genomes]
rs10832640	0.90[EUR][1000 genomes]
rs10832642	0.92[EUR][1000 genomes]
rs10832643	0.92[EUR][1000 genomes]
rs10832647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832648	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832668	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832671	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832672	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832674	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11023962	0.87[EUR][1000 genomes]
rs11023981	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11023988	0.95[EUR][1000 genomes]
rs11024012	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11024033	0.80[AMR][1000 genomes]
rs11529132	0.89[EUR][1000 genomes]
rs11529582	0.87[EUR][1000 genomes]
rs12270317	0.90[EUR][1000 genomes]
rs12271656	0.89[EUR][1000 genomes]
rs12276256	0.89[EUR][1000 genomes]
rs12283896	0.94[EUR][1000 genomes]
rs12289091	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12289093	0.95[EUR][1000 genomes]
rs12289098	0.85[EUR][1000 genomes]
rs12295506	0.85[EUR][1000 genomes]
rs12574185	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575840	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12576360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806064	0.86[EUR][1000 genomes]
rs34840028	0.95[EUR][1000 genomes]
rs35223308	0.89[EUR][1000 genomes]
rs36002981	0.80[EUR][1000 genomes]
rs4492775	0.87[EUR][1000 genomes]
rs4511252	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4525190	0.90[EUR][1000 genomes]
rs4536174	0.88[EUR][1000 genomes]
rs4603269	0.95[EUR][1000 genomes]
rs57248274	0.89[EUR][1000 genomes]
rs60439454	0.89[EUR][1000 genomes]
rs6486296	0.98[EUR][1000 genomes]
rs6486298	0.99[EUR][1000 genomes]
rs6486300	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7103094	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109995	0.80[AMR][1000 genomes]
rs7111016	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7115099	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7116121	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117636	0.89[EUR][1000 genomes]
rs7118181	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7126577	0.87[EUR][1000 genomes]
rs7127280	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128876	0.82[AMR][1000 genomes]
rs7129286	0.90[EUR][1000 genomes]
rs7924787	0.90[EUR][1000 genomes]
rs7927904	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7928885	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935041	0.99[EUR][1000 genomes]
rs7937139	0.90[EUR][1000 genomes]
rs7942856	0.93[EUR][1000 genomes]
rs7943712	0.88[EUR][1000 genomes]
rs7945295	0.92[EUR][1000 genomes]
rs7945898	0.87[EUR][1000 genomes]
rs7951676	0.80[AMR][1000 genomes]
rs9988855	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16595400-16609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:16598600-16609200	Weak transcription	Left Ventricle	heart
3	chr11:16603200-16609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:16603400-16609200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16606400-16609400	Weak transcription	Right Atrium	heart
6	chr11:16606600-16609400	Weak transcription	Psoas Muscle	Psoas
7	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:16608200-16610200	Enhancers	Fetal Heart	heart
9	chr11:16608200-16610400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:16608400-16610400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:16608800-16617200	Weak transcription	Brain Germinal Matrix	brain

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