Variant report

Variant	rs36002981
Chromosome Location	chr11:16739605-16739606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16731994..16736632-chr11:16737184..16741693,5	K562	blood:
2	chr11:16733528..16736209-chr11:16737184..16739750,2	K562	blood:
3	chr11:16738310..16740150-chr11:16759657..16763234,3	MCF-7	breast:
4	chr11:16729644..16731568-chr11:16739578..16741632,2	K562	blood:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10741709	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766337	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10766343	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832647	0.80[EUR][1000 genomes]
rs10832668	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832671	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832672	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832674	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024012	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11024033	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574185	0.80[EUR][1000 genomes]
rs12575840	0.83[AMR][1000 genomes]
rs12576360	0.80[EUR][1000 genomes]
rs12794400	0.80[EUR][1000 genomes]
rs56965201	0.80[EUR][1000 genomes]
rs6486300	0.80[EUR][1000 genomes]
rs7103094	0.80[EUR][1000 genomes]
rs7109995	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111016	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7115099	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7116121	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118181	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7127280	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7127877	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7128876	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927904	0.80[EUR][1000 genomes]
rs7928675	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951676	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9988855	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16739000-16740000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:16739000-16740000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:16739200-16739800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:16739200-16739800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:16739200-16740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:16739200-16741000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:16739600-16740000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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