Variant report

Variant	rs10832668
Chromosome Location	chr11:16685028-16685029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10741709	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10766329	0.81[EUR][1000 genomes]
rs10766331	0.82[EUR][1000 genomes]
rs10766337	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766343	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10832627	0.81[EUR][1000 genomes]
rs10832628	0.81[EUR][1000 genomes]
rs10832629	0.82[EUR][1000 genomes]
rs10832635	0.82[EUR][1000 genomes]
rs10832637	0.82[EUR][1000 genomes]
rs10832639	0.82[EUR][1000 genomes]
rs10832640	0.82[EUR][1000 genomes]
rs10832642	0.84[EUR][1000 genomes]
rs10832643	0.84[EUR][1000 genomes]
rs10832647	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832648	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832671	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10832672	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10832674	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11023981	0.82[EUR][1000 genomes]
rs11023988	0.87[EUR][1000 genomes]
rs11024012	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11024033	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11529132	0.81[EUR][1000 genomes]
rs12270317	0.82[EUR][1000 genomes]
rs12271656	0.81[EUR][1000 genomes]
rs12276256	0.81[EUR][1000 genomes]
rs12283896	0.86[EUR][1000 genomes]
rs12289091	0.91[EUR][1000 genomes]
rs12289093	0.87[EUR][1000 genomes]
rs12574185	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12575840	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576360	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12794400	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34840028	0.87[EUR][1000 genomes]
rs35223308	0.81[EUR][1000 genomes]
rs36002981	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4511252	0.86[EUR][1000 genomes]
rs4525190	0.82[EUR][1000 genomes]
rs4536174	0.81[EUR][1000 genomes]
rs4603269	0.87[EUR][1000 genomes]
rs56965201	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57248274	0.81[EUR][1000 genomes]
rs60439454	0.81[EUR][1000 genomes]
rs6486296	0.90[EUR][1000 genomes]
rs6486298	0.91[EUR][1000 genomes]
rs6486300	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7103094	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7109995	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7111016	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7115099	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116121	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7117636	0.81[EUR][1000 genomes]
rs7118181	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7127280	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7127877	0.84[EUR][1000 genomes]
rs7128876	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7129286	0.82[EUR][1000 genomes]
rs7924787	0.82[EUR][1000 genomes]
rs7927904	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7928675	0.82[EUR][1000 genomes]
rs7928885	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935041	0.91[EUR][1000 genomes]
rs7937139	0.82[EUR][1000 genomes]
rs7942856	0.86[EUR][1000 genomes]
rs7943712	0.80[EUR][1000 genomes]
rs7945295	0.84[EUR][1000 genomes]
rs7951676	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9988855	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832076	chr11:16650873-16691808	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16683800-16686200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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