Variant report

Variant	rs7127877
Chromosome Location	chr11:16783824-16783825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16783396..16784979-chr11:16788281..16791055,2	K562	blood:
2	chr11:16783685..16787549-chr11:16799094..16802277,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10741709	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766343	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832668	0.84[EUR][1000 genomes]
rs10832671	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832672	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832674	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024012	0.87[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024033	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36002981	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7109995	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111016	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7116121	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118181	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7128876	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928675	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7951676	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9988855	0.89[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16773000-16789400	Weak transcription	Esophagus	oesophagus
2	chr11:16775000-16799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16775600-16798200	Weak transcription	Gastric	stomach
4	chr11:16775800-16801000	Weak transcription	Spleen	Spleen
5	chr11:16775800-16804000	Weak transcription	Colonic Mucosa	Colon
6	chr11:16776400-16787200	Weak transcription	Lung	lung
7	chr11:16776600-16797400	Weak transcription	Pancreas	Pancrea
8	chr11:16776600-16798400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:16777000-16803800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:16777200-16826000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:16777800-16797200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:16778400-16784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:16779400-16784600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:16780000-16796600	Weak transcription	Stomach Mucosa	stomach
15	chr11:16780200-16784000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:16780200-16795600	Weak transcription	Liver	Liver
17	chr11:16780200-16796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:16780200-16804600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:16780400-16784000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:16780400-16786400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:16780400-16788800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr11:16780400-16797200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:16780600-16784000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:16780600-16784000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:16780600-16784000	Weak transcription	Placenta	Placenta
26	chr11:16780600-16784200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:16780600-16785800	Weak transcription	Brain Germinal Matrix	brain
28	chr11:16780600-16787600	Weak transcription	Adipose Nuclei	Adipose
29	chr11:16780600-16797000	Weak transcription	Fetal Brain Female	brain
30	chr11:16780600-16798200	Weak transcription	Fetal Intestine Large	intestine
31	chr11:16780600-16799000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:16780800-16785000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:16781000-16796600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:16781800-16784800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:16781800-16789600	Weak transcription	Fetal Heart	heart
36	chr11:16782000-16797000	Weak transcription	Right Ventricle	heart
37	chr11:16782800-16784200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:16782800-16785200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr11:16782800-16785400	Enhancers	Osteobl	bone
40	chr11:16782800-16786000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:16783000-16785400	Enhancers	HSMM	muscle
42	chr11:16783400-16785800	Weak transcription	Fetal Intestine Small	intestine
43	chr11:16783600-16784400	Enhancers	HSMMtube	muscle
44	chr11:16783800-16784200	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:16783800-16784200	Enhancers	NH-A	brain

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