Variant report

Variant	rs7951676
Chromosome Location	chr11:16769250-16769251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16767679..16771451-chr11:16774137..16777840,3	K562	blood:
2	chr11:16760740..16762840-chr11:16767428..16769739,2	MCF-7	breast:
3	chr11:16758591..16760603-chr11:16767705..16770756,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10741709	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766337	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10766343	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832647	0.80[AMR][1000 genomes]
rs10832648	0.80[AMR][1000 genomes]
rs10832668	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10832671	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832672	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832674	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024012	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11024033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12575840	0.85[AMR][1000 genomes]
rs12576360	0.80[AMR][1000 genomes]
rs12794400	0.80[AMR][1000 genomes]
rs36002981	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56965201	0.80[AMR][1000 genomes]
rs6486300	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs7103094	0.80[AMR][1000 genomes]
rs7109995	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111016	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115099	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7116121	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118181	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7127280	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7127877	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128876	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927904	0.80[AMR][1000 genomes]
rs7928675	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928885	0.80[AMR][1000 genomes]
rs9988855	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16762000-16771800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:16762200-16771000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:16762200-16771000	Weak transcription	Right Ventricle	heart
5	chr11:16762200-16771200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:16762200-16780200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:16763000-16780600	Strong transcription	Fetal Thymus	thymus
8	chr11:16763200-16776600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:16763200-16780200	Strong transcription	Osteobl	bone
10	chr11:16763400-16769400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16763400-16770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:16763400-16771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16763400-16771000	Weak transcription	Aorta	Aorta
14	chr11:16763400-16771000	Weak transcription	Gastric	stomach
15	chr11:16763400-16771000	Weak transcription	Lung	lung
16	chr11:16763400-16771000	Weak transcription	Thymus	Thymus
17	chr11:16763400-16771000	Weak transcription	Spleen	Spleen
18	chr11:16763400-16773200	Weak transcription	Stomach Mucosa	stomach
19	chr11:16763400-16780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:16763600-16771000	Weak transcription	Psoas Muscle	Psoas
21	chr11:16763600-16780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:16764000-16781000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:16764200-16778000	Strong transcription	Primary B cells from cord blood	blood
24	chr11:16764400-16777800	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr11:16764400-16780000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:16764400-16780400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr11:16764600-16779600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:16764600-16780200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:16764600-16780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:16764600-16780400	Strong transcription	A549	lung
31	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:16764800-16773600	Strong transcription	NHEK	skin
33	chr11:16765000-16780200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr11:16765000-16780400	Strong transcription	Dnd41	blood
35	chr11:16765200-16771000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:16765400-16774400	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr11:16765400-16780000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr11:16765400-16780400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:16765600-16777800	Strong transcription	HMEC	breast
40	chr11:16765800-16774000	Strong transcription	GM12878-XiMat	blood
41	chr11:16765800-16775800	Strong transcription	Colonic Mucosa	Colon
42	chr11:16765800-16778000	Strong transcription	HUVEC	blood vessel
43	chr11:16765800-16779600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:16765800-16779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:16765800-16780200	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:16765800-16780400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:16765800-16780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:16765800-16780600	Strong transcription	Placenta	Placenta
49	chr11:16766000-16769800	Genic enhancers	Fetal Heart	heart
50	chr11:16766000-16775800	Strong transcription	HepG2	liver

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