Variant report

Variant	rs10832647
Chromosome Location	chr11:16616763-16616764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16611164..16612979-chr11:16614999..16617822,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10741703	0.82[AFR][1000 genomes]
rs10741709	0.80[AMR][1000 genomes]
rs10766329	0.89[EUR][1000 genomes]
rs10766331	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10766337	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832613	1.00[CEU][hapmap]
rs10832614	1.00[CEU][hapmap]
rs10832622	0.87[EUR][1000 genomes]
rs10832627	0.89[EUR][1000 genomes]
rs10832628	0.89[EUR][1000 genomes]
rs10832629	0.90[EUR][1000 genomes]
rs10832635	0.90[EUR][1000 genomes]
rs10832637	0.90[EUR][1000 genomes]
rs10832639	0.90[EUR][1000 genomes]
rs10832640	0.90[EUR][1000 genomes]
rs10832642	0.92[EUR][1000 genomes]
rs10832643	0.92[EUR][1000 genomes]
rs10832648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832668	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832671	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832672	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10832674	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11023948	0.93[CEU][hapmap]
rs11023962	0.87[EUR][1000 genomes]
rs11023981	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11023988	0.95[EUR][1000 genomes]
rs11024012	0.86[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11024033	0.80[AMR][1000 genomes]
rs11529132	0.89[EUR][1000 genomes]
rs11529582	0.87[EUR][1000 genomes]
rs12270317	0.90[EUR][1000 genomes]
rs12271656	0.89[EUR][1000 genomes]
rs12276256	0.89[EUR][1000 genomes]
rs12283896	0.94[EUR][1000 genomes]
rs12289091	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12289093	0.95[EUR][1000 genomes]
rs12289098	0.85[EUR][1000 genomes]
rs12293115	1.00[CEU][hapmap]
rs12295506	0.85[EUR][1000 genomes]
rs12574185	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12575840	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576360	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12794400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12806064	0.86[EUR][1000 genomes]
rs34840028	0.95[EUR][1000 genomes]
rs35223308	0.89[EUR][1000 genomes]
rs36002981	0.80[EUR][1000 genomes]
rs4492775	0.87[EUR][1000 genomes]
rs4511252	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4525190	0.90[EUR][1000 genomes]
rs4536174	0.88[EUR][1000 genomes]
rs4603269	0.95[EUR][1000 genomes]
rs56965201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57248274	0.89[EUR][1000 genomes]
rs60439454	0.89[EUR][1000 genomes]
rs6486296	0.98[EUR][1000 genomes]
rs6486298	0.99[EUR][1000 genomes]
rs6486300	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109995	0.80[AMR][1000 genomes]
rs7111016	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7115099	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116121	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7117636	0.89[EUR][1000 genomes]
rs7118181	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7118874	1.00[CEU][hapmap]
rs7126577	0.87[EUR][1000 genomes]
rs7127280	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7128876	0.82[AMR][1000 genomes]
rs7129286	0.90[EUR][1000 genomes]
rs7924787	0.90[EUR][1000 genomes]
rs7927904	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7928885	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7935041	0.99[EUR][1000 genomes]
rs7937139	0.90[EUR][1000 genomes]
rs7942856	0.93[EUR][1000 genomes]
rs7943712	0.88[EUR][1000 genomes]
rs7945295	0.92[EUR][1000 genomes]
rs7945898	0.87[EUR][1000 genomes]
rs7951676	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs9988855	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16608000-16621600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:16608800-16617200	Weak transcription	Brain Germinal Matrix	brain
3	chr11:16610200-16617200	Weak transcription	K562	blood
4	chr11:16610400-16617000	Weak transcription	Psoas Muscle	Psoas
5	chr11:16610400-16617800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16610400-16623800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:16616000-16617200	Weak transcription	Fetal Heart	heart
8	chr11:16616000-16617200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:16616000-16623400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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