Variant report

Variant	rs11024012
Chromosome Location	chr11:16691743-16691744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16691188..16692933-chr11:16759171..16761829,2	MCF-7	breast:
2	chr11:16691570..16693601-chr11:16731632..16734150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10741709	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10766337	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10766343	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10832613	0.86[CEU][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap]
rs10832614	0.86[CEU][hapmap];0.80[JPT][hapmap];0.90[MEX][hapmap]
rs10832642	0.81[EUR][1000 genomes]
rs10832643	0.81[EUR][1000 genomes]
rs10832646	0.81[ASN][1000 genomes]
rs10832647	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832648	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10832668	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10832671	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832672	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832674	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023988	0.85[EUR][1000 genomes]
rs11024033	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12283896	0.84[EUR][1000 genomes]
rs12289091	0.88[EUR][1000 genomes]
rs12289093	0.85[EUR][1000 genomes]
rs12293115	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs12574185	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12575840	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12576360	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12794400	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34840028	0.85[EUR][1000 genomes]
rs36002981	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4359170	0.81[ASN][1000 genomes]
rs4511252	0.83[EUR][1000 genomes]
rs4603269	0.85[EUR][1000 genomes]
rs56965201	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6486296	0.87[EUR][1000 genomes]
rs6486298	0.88[EUR][1000 genomes]
rs6486300	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7103094	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7109995	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7111016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7115099	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7116121	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127280	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7127877	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7128876	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7927904	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7928675	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7928885	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7935041	0.88[EUR][1000 genomes]
rs7937139	0.80[AMR][1000 genomes]
rs7942856	0.83[EUR][1000 genomes]
rs7945295	0.81[EUR][1000 genomes]
rs7951676	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9988855	1.00[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832076	chr11:16650873-16691808	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3396970	chr11:16658425-16715569	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16690800-16691800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:16690800-16692000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:16690800-16692000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:16690800-16692000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:16690800-16692000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:16690800-16692000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:16690800-16692000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:16690800-16692000	Enhancers	HMEC	breast
9	chr11:16690800-16692000	Enhancers	NHEK	skin
10	chr11:16691000-16691800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:16691000-16691800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:16691000-16691800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:16691000-16691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:16691000-16691800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:16691000-16691800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:16691000-16691800	Enhancers	A549	lung
17	chr11:16691000-16692000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr11:16691000-16692000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:16691000-16692200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:16691200-16691800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:16691200-16692000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:16691400-16691800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr11:16691400-16692200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:16691600-16691800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr11:16691600-16692400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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