Variant report

Variant	rs4359170
Chromosome Location	chr11:16596152-16596153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16594124..16596937-chr11:16631797..16633860,2	K562	blood:
2	chr11:16419446..16421077-chr11:16594061..16596211,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10766331	0.88[ASN][1000 genomes]
rs10766343	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs10832613	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10832614	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10832628	0.83[ASN][1000 genomes]
rs10832629	0.83[ASN][1000 genomes]
rs10832635	0.87[ASN][1000 genomes]
rs10832637	0.87[ASN][1000 genomes]
rs10832639	0.88[ASN][1000 genomes]
rs10832640	0.88[ASN][1000 genomes]
rs10832642	0.88[ASN][1000 genomes]
rs10832643	0.88[ASN][1000 genomes]
rs10832646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023948	0.82[JPT][hapmap]
rs11023981	0.88[ASN][1000 genomes]
rs11023987	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023988	0.88[ASN][1000 genomes]
rs11024012	0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12270317	0.80[ASN][1000 genomes]
rs12283896	0.86[ASN][1000 genomes]
rs12289091	0.97[ASN][1000 genomes]
rs12289093	0.94[ASN][1000 genomes]
rs12293115	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs12786848	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34840028	0.88[ASN][1000 genomes]
rs4447142	0.83[EUR][1000 genomes]
rs4511252	0.88[ASN][1000 genomes]
rs4525190	0.87[ASN][1000 genomes]
rs4536174	0.87[ASN][1000 genomes]
rs4578351	0.97[ASN][1000 genomes]
rs4603269	0.88[ASN][1000 genomes]
rs6486296	0.96[ASN][1000 genomes]
rs6486298	0.97[ASN][1000 genomes]
rs7111016	0.82[ASN][1000 genomes]
rs7118181	0.81[ASN][1000 genomes]
rs7118874	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7129286	0.87[ASN][1000 genomes]
rs7924787	0.88[ASN][1000 genomes]
rs7928675	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs7935041	0.97[ASN][1000 genomes]
rs7937139	0.88[ASN][1000 genomes]
rs7942856	0.86[ASN][1000 genomes]
rs7943712	0.86[ASN][1000 genomes]
rs7945295	0.88[ASN][1000 genomes]
rs7951676	0.82[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16584400-16605600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:16593400-16598400	Weak transcription	Left Ventricle	heart
3	chr11:16595200-16597000	Weak transcription	Fetal Heart	heart
4	chr11:16595200-16598400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16595200-16608200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:16595400-16609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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