Variant report

Variant	rs4578351
Chromosome Location	chr11:16587580-16587581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10766331	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832628	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10832629	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10832635	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10832637	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10832639	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10832640	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832642	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832643	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10832646	0.97[ASN][1000 genomes]
rs11023981	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11023987	0.92[ASN][1000 genomes]
rs11023988	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12270317	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12283896	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12289091	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12289093	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34840028	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4359170	0.97[ASN][1000 genomes]
rs4511252	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4525190	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4536174	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4603269	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6486296	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6486298	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7129286	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7924787	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7935041	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7937139	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7942856	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7943712	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7945295	0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983173	chr11:16581343-16600284	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16573000-16594600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16583800-16594000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16584400-16593000	Weak transcription	Psoas Muscle	Psoas
4	chr11:16584400-16605600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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