Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10766331	0.87[ASN][1000 genomes]
rs10832628	0.83[ASN][1000 genomes]
rs10832629	0.84[ASN][1000 genomes]
rs10832635	0.88[ASN][1000 genomes]
rs10832637	0.88[ASN][1000 genomes]
rs10832639	0.86[ASN][1000 genomes]
rs10832640	0.87[ASN][1000 genomes]
rs10832642	0.87[ASN][1000 genomes]
rs10832643	0.87[ASN][1000 genomes]
rs10832646	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11023981	0.87[ASN][1000 genomes]
rs11023987	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023988	0.87[ASN][1000 genomes]
rs12270317	0.81[ASN][1000 genomes]
rs12283896	0.84[ASN][1000 genomes]
rs34840028	0.87[ASN][1000 genomes]
rs4359170	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4511252	0.87[ASN][1000 genomes]
rs4525190	0.88[ASN][1000 genomes]
rs4536174	0.88[ASN][1000 genomes]
rs4603269	0.87[ASN][1000 genomes]
rs7129286	0.88[ASN][1000 genomes]
rs7924787	0.87[ASN][1000 genomes]
rs7937139	0.87[ASN][1000 genomes]
rs7942856	0.85[ASN][1000 genomes]
rs7943712	0.87[ASN][1000 genomes]
rs7945295	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16542800-16548800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16544600-16558200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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