Variant report

Variant	rs10766343
Chromosome Location	chr11:16772357-16772358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10741709	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766337	0.84[AMR][1000 genomes]
rs10832668	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10832671	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832672	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832674	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11024012	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11024033	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575840	0.84[AMR][1000 genomes]
rs36002981	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7109995	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111016	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7115099	0.82[AMR][1000 genomes]
rs7116121	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7118181	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7127280	0.84[AMR][1000 genomes]
rs7127877	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7128876	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7928675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7951676	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9988855	0.89[GIH][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16762200-16780200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16763000-16780600	Strong transcription	Fetal Thymus	thymus
4	chr11:16763200-16776600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:16763200-16780200	Strong transcription	Osteobl	bone
6	chr11:16763400-16773200	Weak transcription	Stomach Mucosa	stomach
7	chr11:16763400-16780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:16763600-16780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:16764000-16781000	Strong transcription	Primary B cells from peripheral blood	blood
10	chr11:16764200-16778000	Strong transcription	Primary B cells from cord blood	blood
11	chr11:16764400-16777800	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr11:16764400-16780000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr11:16764400-16780400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr11:16764600-16779600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:16764600-16780200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:16764600-16780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:16764600-16780400	Strong transcription	A549	lung
18	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:16764800-16773600	Strong transcription	NHEK	skin
20	chr11:16765000-16780200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:16765000-16780400	Strong transcription	Dnd41	blood
22	chr11:16765400-16774400	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr11:16765400-16780000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:16765400-16780400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:16765600-16777800	Strong transcription	HMEC	breast
26	chr11:16765800-16774000	Strong transcription	GM12878-XiMat	blood
27	chr11:16765800-16775800	Strong transcription	Colonic Mucosa	Colon
28	chr11:16765800-16778000	Strong transcription	HUVEC	blood vessel
29	chr11:16765800-16779600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:16765800-16779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:16765800-16780200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:16765800-16780400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:16765800-16780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:16765800-16780600	Strong transcription	Placenta	Placenta
35	chr11:16766000-16775800	Strong transcription	HepG2	liver
36	chr11:16766000-16778400	Strong transcription	Ovary	ovary
37	chr11:16766000-16779800	Strong transcription	Hela-S3	cervix
38	chr11:16766000-16780200	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr11:16766000-16780200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:16766000-16780800	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:16766000-16781000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:16766200-16776800	Strong transcription	HSMM	muscle
43	chr11:16766200-16778800	Strong transcription	Liver	Liver
44	chr11:16766200-16780200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:16766200-16780600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:16766200-16780600	Strong transcription	Fetal Intestine Large	intestine
47	chr11:16766400-16777800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:16766400-16778000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:16766400-16779800	Strong transcription	NH-A	brain
50	chr11:16766400-16780400	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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