Variant report

Variant	rs10741709
Chromosome Location	chr11:16781565-16781566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16781045..16782906-chr11:16784364..16786696,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10766337	0.83[AMR][1000 genomes]
rs10766343	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832647	0.80[AMR][1000 genomes]
rs10832648	0.80[AMR][1000 genomes]
rs10832668	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10832671	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832672	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832674	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11024012	0.87[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11024033	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12575840	0.83[AMR][1000 genomes]
rs12576360	0.80[AMR][1000 genomes]
rs12794400	0.80[AMR][1000 genomes]
rs36002981	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56965201	0.80[AMR][1000 genomes]
rs7103094	0.80[AMR][1000 genomes]
rs7109995	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111016	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7115099	0.80[AMR][1000 genomes]
rs7116121	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118181	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7127280	0.83[AMR][1000 genomes]
rs7127877	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7128876	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927904	0.80[AMR][1000 genomes]
rs7928675	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951676	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9988855	0.89[GIH][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:16773000-16782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:16773000-16783400	Weak transcription	K562	blood
5	chr11:16773000-16789400	Weak transcription	Esophagus	oesophagus
6	chr11:16773800-16781600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:16775000-16799200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:16775200-16782000	Weak transcription	Aorta	Aorta
9	chr11:16775600-16781800	Weak transcription	Right Ventricle	heart
10	chr11:16775600-16783200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:16775600-16798200	Weak transcription	Gastric	stomach
12	chr11:16775800-16783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:16775800-16801000	Weak transcription	Spleen	Spleen
14	chr11:16775800-16804000	Weak transcription	Colonic Mucosa	Colon
15	chr11:16776000-16783200	Weak transcription	NHEK	skin
16	chr11:16776400-16787200	Weak transcription	Lung	lung
17	chr11:16776600-16782200	Weak transcription	Colon Smooth Muscle	Colon
18	chr11:16776600-16782600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:16776600-16797400	Weak transcription	Pancreas	Pancrea
20	chr11:16776600-16798400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:16777000-16781800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:16777000-16781800	Weak transcription	Fetal Lung	lung
23	chr11:16777000-16803800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr11:16777200-16826000	Weak transcription	Brain Substantia Nigra	brain
25	chr11:16777800-16781600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:16777800-16781800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:16777800-16782000	Weak transcription	Fetal Kidney	kidney
28	chr11:16777800-16782000	Weak transcription	HMEC	breast
29	chr11:16777800-16782800	Weak transcription	NHDF-Ad	bronchial
30	chr11:16777800-16797200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:16778000-16781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:16778400-16782400	Weak transcription	Ovary	ovary
33	chr11:16778400-16782800	Weak transcription	Fetal Stomach	stomach
34	chr11:16778400-16784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:16779400-16784600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:16779600-16781600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:16779800-16781800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:16779800-16782400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr11:16779800-16783000	Weak transcription	Hela-S3	cervix
40	chr11:16780000-16781600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:16780000-16782000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:16780000-16782800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:16780000-16796600	Weak transcription	Stomach Mucosa	stomach
44	chr11:16780200-16782000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:16780200-16782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:16780200-16782200	Weak transcription	Brain Hippocampus Middle	brain
47	chr11:16780200-16782400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr11:16780200-16782400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr11:16780200-16782600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:16780200-16784000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links