Variant report

Variant	rs7115099
Chromosome Location	chr11:16632827-16632828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr11:16632105-16632939	H1-hESC	embryonic stem cell:	n/a	chr11:16632272-16632281 chr11:16632713-16632720
2	SUZ12	chr11:16631604-16635872	NT2-D1	testis:	n/a	n/a
3	NRF1	chr11:16632791-16632877	GM12878	blood:	n/a	n/a
4	MAX	chr11:16632102-16632847	H1-hESC	embryonic stem cell:	n/a	chr11:16632503-16632512 chr11:16632259-16632268 chr11:16632254-16632273 chr11:16632257-16632270
5	SUZ12	chr11:16631338-16633859	H1-hESC	embryonic stem cell:	n/a	n/a
6	E2F6	chr11:16632381-16632884	H1-hESC	embryonic stem cell:	n/a	chr11:16632713-16632720

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16594124..16596937-chr11:16631797..16633860,2	K562	blood:

Variant related genes	Relation type
C11orf58	TF binding region
SOX6	TF binding region

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10741703	0.81[AFR][1000 genomes]
rs10741709	0.80[AMR][1000 genomes]
rs10766329	0.87[EUR][1000 genomes]
rs10766331	0.88[EUR][1000 genomes]
rs10766337	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766343	0.82[AMR][1000 genomes]
rs10832613	1.00[CEU][hapmap]
rs10832614	1.00[CEU][hapmap]
rs10832622	0.85[EUR][1000 genomes]
rs10832627	0.87[EUR][1000 genomes]
rs10832628	0.87[EUR][1000 genomes]
rs10832629	0.88[EUR][1000 genomes]
rs10832635	0.88[EUR][1000 genomes]
rs10832637	0.88[EUR][1000 genomes]
rs10832639	0.88[EUR][1000 genomes]
rs10832640	0.88[EUR][1000 genomes]
rs10832642	0.90[EUR][1000 genomes]
rs10832643	0.90[EUR][1000 genomes]
rs10832647	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832648	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832668	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832671	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832672	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832674	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11023948	0.93[CEU][hapmap]
rs11023962	0.85[EUR][1000 genomes]
rs11023981	0.88[EUR][1000 genomes]
rs11023988	0.93[EUR][1000 genomes]
rs11024012	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11024033	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11529132	0.87[EUR][1000 genomes]
rs11529582	0.85[EUR][1000 genomes]
rs12270317	0.88[EUR][1000 genomes]
rs12271656	0.87[EUR][1000 genomes]
rs12276256	0.87[EUR][1000 genomes]
rs12283896	0.93[EUR][1000 genomes]
rs12289091	0.97[EUR][1000 genomes]
rs12289093	0.93[EUR][1000 genomes]
rs12289098	0.83[EUR][1000 genomes]
rs12293115	1.00[CEU][hapmap]
rs12295506	0.83[EUR][1000 genomes]
rs12574185	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575840	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576360	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12794400	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12806064	0.85[EUR][1000 genomes]
rs34840028	0.93[EUR][1000 genomes]
rs35223308	0.87[EUR][1000 genomes]
rs36002981	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4492775	0.85[EUR][1000 genomes]
rs4511252	0.92[EUR][1000 genomes]
rs4525190	0.88[EUR][1000 genomes]
rs4536174	0.86[EUR][1000 genomes]
rs4603269	0.93[EUR][1000 genomes]
rs56965201	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57248274	0.87[EUR][1000 genomes]
rs60439454	0.87[EUR][1000 genomes]
rs6486296	0.96[EUR][1000 genomes]
rs6486298	0.97[EUR][1000 genomes]
rs6486300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103094	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7109995	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7111016	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7116121	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7117636	0.87[EUR][1000 genomes]
rs7118181	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7118874	1.00[CEU][hapmap]
rs7126577	0.85[EUR][1000 genomes]
rs7127280	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7128876	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7129286	0.88[EUR][1000 genomes]
rs7924787	0.88[EUR][1000 genomes]
rs7927904	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928885	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7935041	0.97[EUR][1000 genomes]
rs7937139	0.88[EUR][1000 genomes]
rs7942856	0.92[EUR][1000 genomes]
rs7943712	0.86[EUR][1000 genomes]
rs7945295	0.90[EUR][1000 genomes]
rs7945898	0.85[EUR][1000 genomes]
rs7951676	1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9988855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16629800-16634200	Weak transcription	Pancreas	Pancrea
2	chr11:16630000-16633200	Weak transcription	Right Atrium	heart
3	chr11:16630000-16633600	Weak transcription	Left Ventricle	heart
4	chr11:16630000-16633600	Weak transcription	Right Ventricle	heart
5	chr11:16630000-16634200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:16630000-16634200	Weak transcription	Psoas Muscle	Psoas
7	chr11:16630000-16634400	Weak transcription	K562	blood
8	chr11:16630600-16633200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:16630600-16633800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr11:16631800-16633400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:16631800-16633800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr11:16631800-16635000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:16632200-16633600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
14	chr11:16632400-16633000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:16632400-16633600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr11:16632600-16633000	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr11:16632600-16633400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:16632600-16633400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:16632600-16633400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:16632600-16633400	Bivalent Enhancer	Fetal Intestine Small	intestine
21	chr11:16632600-16634200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:16632600-16634200	Bivalent Enhancer	Fetal Lung	lung
23	chr11:16632600-16634400	Bivalent Enhancer	Liver	Liver
24	chr11:16632600-16635000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:16632800-16633000	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:16632800-16633000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr11:16632800-16633000	Bivalent Enhancer	Fetal Intestine Large	intestine
28	chr11:16632800-16633200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
29	chr11:16632800-16633400	Bivalent Enhancer	Fetal Heart	heart
30	chr11:16632800-16634200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
31	chr11:16632800-16634400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
32	chr11:16632800-16634600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr11:16632800-16635000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:16632800-16636000	Bivalent/Poised TSS	Fetal Kidney	kidney
35	chr11:16632800-16636200	Bivalent/Poised TSS	Fetal Brain Female	brain

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