Variant report

Variant	rs10835924
Chromosome Location	chr11:32501219-32501220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10160794	0.90[ASN][1000 genomes]
rs10835925	0.90[ASN][1000 genomes]
rs10835927	0.89[ASN][1000 genomes]
rs11031812	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11031814	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12282155	0.89[ASN][1000 genomes]
rs3858459	0.80[ASN][1000 genomes]
rs3858461	0.88[ASN][1000 genomes]
rs4963209	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7101917	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32499200-32501800	Enhancers	Brain Germinal Matrix	brain
2	chr11:32499400-32502000	Enhancers	Fetal Heart	heart
3	chr11:32500800-32510200	Weak transcription	Right Atrium	heart
4	chr11:32501200-32503000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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