Variant report

Variant	rs10835925
Chromosome Location	chr11:32503341-32503342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10160794	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767941	0.85[AMR][1000 genomes]
rs10835917	0.83[ASN][1000 genomes]
rs10835924	0.90[ASN][1000 genomes]
rs10835927	0.99[ASN][1000 genomes]
rs11031812	0.91[ASN][1000 genomes]
rs11031814	0.90[ASN][1000 genomes]
rs12282155	0.99[ASN][1000 genomes]
rs2418931	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3858459	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3858461	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4963209	0.91[ASN][1000 genomes]
rs6484580	0.85[AMR][1000 genomes]
rs7101917	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103780	0.85[AMR][1000 genomes]
rs7129461	0.85[AMR][1000 genomes]
rs7944133	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832108	chr11:32395937-32560583	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32500800-32510200	Weak transcription	Right Atrium	heart
2	chr11:32502800-32503400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:32502800-32504000	Enhancers	K562	blood
4	chr11:32503000-32503400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:32503000-32503400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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