Variant report

Variant	rs10835967
Chromosome Location	chr11:32778732-32778733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10734414	0.94[ASN][1000 genomes]
rs10742287	0.83[ASN][1000 genomes]
rs10742288	0.94[ASN][1000 genomes]
rs10767961	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10767964	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767967	0.94[ASN][1000 genomes]
rs10835968	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10835971	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10835972	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10835975	0.94[ASN][1000 genomes]
rs10835976	0.94[ASN][1000 genomes]
rs11031971	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11031990	0.84[ASN][1000 genomes]
rs11031991	0.93[ASN][1000 genomes]
rs11529903	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1509890	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2089693	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2419761	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4756244	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4756245	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6484595	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484596	0.97[ASN][1000 genomes]
rs6484597	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7102857	0.94[ASN][1000 genomes]
rs7103408	0.94[ASN][1000 genomes]
rs7109509	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7113697	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7932536	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7936690	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs960389	0.94[ASN][1000 genomes]
rs9666408	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv983179	chr11:32745147-32782088	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3354462	chr11:32776001-32779249	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3405575	chr11:32776326-32779099	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32777800-32790200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links