Variant report

Variant	rs10836072
Chromosome Location	chr11:33580710-33580711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33579969..33581756-chr11:33591394..33593164,2	K562	blood:
2	chr11:33492401..33495030-chr11:33579028..33581044,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10219251	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10219258	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10437588	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10768008	0.81[EUR][1000 genomes]
rs10836068	0.81[EUR][1000 genomes]
rs10836069	0.86[EUR][1000 genomes]
rs10836070	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836071	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10836077	0.84[EUR][1000 genomes]
rs10836078	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs11032287	0.86[EUR][1000 genomes]
rs11032291	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11032295	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11032300	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs11032305	0.82[EUR][1000 genomes]
rs11032306	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs11032307	0.81[EUR][1000 genomes]
rs11032310	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs11032311	0.82[EUR][1000 genomes]
rs12270137	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12273774	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12277742	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs12286387	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12806278	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs1321013	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs1473729	0.83[EUR][1000 genomes]
rs16924469	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs2076625	0.89[CHB][hapmap]
rs2076626	0.89[CHB][hapmap];0.80[EUR][1000 genomes]
rs2224528	0.82[EUR][1000 genomes]
rs2273115	0.81[EUR][1000 genomes]
rs2273117	0.89[CHB][hapmap];0.81[EUR][1000 genomes]
rs2901321	0.82[EUR][1000 genomes]
rs34418271	0.83[EUR][1000 genomes]
rs34862267	0.81[EUR][1000 genomes]
rs34960900	0.82[EUR][1000 genomes]
rs35112514	0.80[EUR][1000 genomes]
rs35867834	0.83[EUR][1000 genomes]
rs35916089	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35917507	0.81[EUR][1000 genomes]
rs4755201	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs4755207	0.81[EUR][1000 genomes]
rs4755689	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4755693	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4755718	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs55891606	0.83[EUR][1000 genomes]
rs61888295	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61888322	0.82[EUR][1000 genomes]
rs6484658	0.89[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs7102647	0.89[CHB][hapmap];0.84[EUR][1000 genomes]
rs7104844	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109146	0.86[EUR][1000 genomes]
rs7110105	0.84[CHB][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs7119677	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs7122768	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7128963	0.87[CHB][hapmap];0.85[EUR][1000 genomes]
rs735327	0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs761436	0.85[EUR][1000 genomes]
rs7939586	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs7945168	0.95[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9988888	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1041680	chr11:33249367-33637249	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv540997	chr11:33249367-33637249	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33555200-33617600	Weak transcription	Fetal Brain Male	brain
2	chr11:33563200-33585200	Weak transcription	Brain Angular Gyrus	brain
3	chr11:33564800-33585000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:33565200-33583600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:33566800-33581000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:33567000-33581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:33568200-33606600	Weak transcription	HUVEC	blood vessel
8	chr11:33569800-33605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:33571400-33581000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:33574600-33581000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:33575400-33589000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:33575800-33581200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr11:33578000-33586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:33578400-33581000	Weak transcription	Fetal Brain Female	brain
15	chr11:33578800-33599600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:33579400-33585000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:33579400-33588400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:33579400-33594400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:33579400-33605000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:33579600-33582000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:33579600-33585200	Weak transcription	HSMM	muscle
22	chr11:33579600-33586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:33579600-33594400	Weak transcription	HSMMtube	muscle
24	chr11:33579600-33605600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:33579600-33607000	Weak transcription	Osteobl	bone
26	chr11:33579800-33581400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:33580000-33581000	Weak transcription	NH-A	brain
28	chr11:33580000-33585000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:33580000-33588600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:33580000-33594200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:33580000-33597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:33580000-33598400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:33580200-33581000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:33580200-33581000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:33580200-33596400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:33580600-33587000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links