Variant report

Variant	rs10836097
Chromosome Location	chr11:33688894-33688895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10836091	0.81[ASN][1000 genomes]
rs10836094	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10836095	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs1096557	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11032332	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs11032335	0.83[EUR][1000 genomes]
rs11032338	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11601472	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12226271	0.90[EUR][1000 genomes]
rs12280103	0.90[EUR][1000 genomes]
rs1321015	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs1321016	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2295064	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs3741021	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs831622	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10836097	C11orf41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33665800-33691600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:33674000-33689800	Weak transcription	NH-A	brain
3	chr11:33674000-33690800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:33674200-33690000	Weak transcription	Fetal Brain Male	brain
5	chr11:33674400-33690800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:33674400-33691400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:33674400-33691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:33674600-33690800	Weak transcription	Psoas Muscle	Psoas
9	chr11:33674800-33700000	Weak transcription	Brain Angular Gyrus	brain
10	chr11:33676000-33690800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:33677400-33689400	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:33677800-33689200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:33678800-33695400	Weak transcription	Brain Anterior Caudate	brain
14	chr11:33680000-33691400	Weak transcription	Osteobl	bone
15	chr11:33680400-33691600	Weak transcription	HSMMtube	muscle
16	chr11:33680400-33692000	Weak transcription	GM12878-XiMat	blood
17	chr11:33681000-33690400	Strong transcription	Fetal Brain Female	brain
18	chr11:33683800-33690000	Strong transcription	Brain Germinal Matrix	brain
19	chr11:33684000-33692000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:33684600-33689600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:33684800-33689400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:33685200-33697800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:33686000-33691400	Weak transcription	HUVEC	blood vessel
24	chr11:33686200-33692000	Weak transcription	Pancreas	Pancrea
25	chr11:33686800-33689400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr11:33686800-33689800	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:33686800-33690800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:33687000-33689600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:33687000-33689800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:33687000-33689800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:33687200-33689800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:33687400-33689800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:33687400-33690800	Weak transcription	Brain Substantia Nigra	brain
34	chr11:33687600-33689200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr11:33687600-33689400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:33687600-33691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:33687800-33689200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:33687800-33689400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:33687800-33689400	Weak transcription	Stomach Mucosa	stomach
40	chr11:33687800-33689400	Weak transcription	NHEK	skin
41	chr11:33687800-33690800	Weak transcription	Gastric	stomach
42	chr11:33688000-33689400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:33688000-33689400	Weak transcription	Esophagus	oesophagus
44	chr11:33688200-33689400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:33688200-33690800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:33688400-33690400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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