Variant report

Variant	rs831622
Chromosome Location	chr11:33704057-33704058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33564143..33565156-chr11:33703966..33705027,5	MCF-7	breast:
2	chr11:33564210..33565457-chr11:33703688..33704553,5	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10836094	0.84[EUR][1000 genomes]
rs10836095	0.84[EUR][1000 genomes]
rs10836097	0.82[AMR][1000 genomes]
rs1096557	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11032332	0.84[EUR][1000 genomes]
rs11032338	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11601472	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12226271	0.84[EUR][1000 genomes]
rs12280103	0.84[EUR][1000 genomes]
rs12574994	0.82[AMR][1000 genomes]
rs1321015	0.84[EUR][1000 genomes]
rs1321016	0.84[EUR][1000 genomes]
rs2295064	0.84[EUR][1000 genomes]
rs3741020	0.82[AMR][1000 genomes]
rs3741021	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7101438	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs831622	C11orf41	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33691000-33712400	Weak transcription	Psoas Muscle	Psoas
2	chr11:33691800-33704200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:33694000-33713600	Weak transcription	Fetal Brain Female	brain
4	chr11:33694400-33704600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:33697600-33705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:33703400-33704600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:33703400-33704800	Enhancers	HMEC	breast
8	chr11:33703400-33706800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:33703600-33704600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:33703600-33704600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr11:33703600-33704600	Enhancers	NHEK	skin
12	chr11:33703600-33705200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:33703600-33705200	Enhancers	Esophagus	oesophagus
14	chr11:33703600-33705800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:33703800-33704400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:33703800-33704600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:33703800-33704600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:33703800-33704800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:33703800-33705200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:33703800-33706000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr11:33703800-33706000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:33703800-33706600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr11:33703800-33707000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:33704000-33704200	Enhancers	Lung	lung
25	chr11:33704000-33704400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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