Variant report

Variant	rs10836198
Chromosome Location	chr11:34384728-34384729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10836199	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836205	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11032659	0.84[EUR][1000 genomes]
rs12364122	0.86[EUR][1000 genomes]
rs2073057	0.83[EUR][1000 genomes]
rs208667	0.84[EUR][1000 genomes]
rs208678	0.81[EUR][1000 genomes]
rs208679	0.83[EUR][1000 genomes]
rs2746151	0.84[EUR][1000 genomes]
rs2746159	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2746162	0.86[EUR][1000 genomes]
rs373443	0.82[EUR][1000 genomes]
rs3740793	0.93[ASN][1000 genomes]
rs409598	0.83[EUR][1000 genomes]
rs4556514	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs551929	0.83[EUR][1000 genomes]
rs60471588	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34380800-34385000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:34380800-34385600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:34381000-34385000	Weak transcription	Fetal Thymus	thymus
4	chr11:34381000-34385600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:34381000-34392800	Weak transcription	Right Atrium	heart
6	chr11:34381200-34384800	Weak transcription	Stomach Mucosa	stomach
7	chr11:34381200-34385400	Weak transcription	Thymus	Thymus
8	chr11:34381200-34385600	Weak transcription	Primary T cells from cord blood	blood
9	chr11:34381200-34385600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:34381200-34385600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:34381400-34385200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:34381600-34385600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:34382000-34385000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:34384000-34385000	Enhancers	HepG2	liver
15	chr11:34384200-34386600	Enhancers	Liver	Liver
16	chr11:34384200-34386800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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