Variant report
Variant | rs10836205 |
---|---|
Chromosome Location | chr11:34415281-34415282 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10836192 | 0.81[CEU][hapmap] |
rs10836198 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10836199 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11032659 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs12288819 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap] |
rs12361888 | 0.81[CEU][hapmap] |
rs12364122 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs1535717 | 0.83[EUR][1000 genomes] |
rs1535718 | 0.83[EUR][1000 genomes] |
rs1535720 | 0.83[EUR][1000 genomes] |
rs2073057 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs208667 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs208678 | 1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
rs208679 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2296144 | 0.83[EUR][1000 genomes] |
rs2746151 | 0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs2746159 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2746162 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs373443 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs3740793 | 0.81[ASN][1000 genomes] |
rs3781708 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap] |
rs409598 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4556514 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs550965 | 0.85[EUR][1000 genomes] |
rs551929 | 0.90[EUR][1000 genomes] |
rs60471588 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7116915 | 0.81[CEU][hapmap] |
rs7117611 | 0.81[CEU][hapmap] |
rs742635 | 0.86[CEU][hapmap] |
rs7934929 | 0.81[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv897205 | chr11:34248229-34507213 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv897207 | chr11:34253683-34621004 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
3 | nsv897208 | chr11:34257064-34562247 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
4 | nsv897209 | chr11:34309519-34548906 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
5 | nsv983151 | chr11:34401342-34444667 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:34415000-34416200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |