Variant report

Variant	rs2746159
Chromosome Location	chr11:34416666-34416667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10836192	1.00[ASW][hapmap];0.81[CEU][hapmap]
rs10836198	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10836199	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11032659	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12288819	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs12361888	0.81[CEU][hapmap]
rs12364122	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1535717	0.87[EUR][1000 genomes]
rs1535718	0.87[EUR][1000 genomes]
rs1535720	0.87[EUR][1000 genomes]
rs2073057	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs208667	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs208678	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs208679	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2296144	0.87[EUR][1000 genomes]
rs2746151	0.90[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2746162	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs373443	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3740793	0.80[ASN][1000 genomes]
rs3781708	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs409598	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4556514	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs550965	0.89[EUR][1000 genomes]
rs551929	0.93[EUR][1000 genomes]
rs60471588	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7116915	1.00[ASW][hapmap];0.81[CEU][hapmap]
rs7117611	0.81[CEU][hapmap]
rs742635	0.86[CEU][hapmap]
rs7932025	1.00[ASW][hapmap];0.88[LWK][hapmap]
rs7934929	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv983151	chr11:34401342-34444667	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34415600-34419000	Enhancers	Hela-S3	cervix
2	chr11:34415800-34419000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:34416000-34417400	Enhancers	NHEK	skin
4	chr11:34416000-34419000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:34416000-34419000	Enhancers	HMEC	breast
6	chr11:34416200-34417000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:34416200-34419000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:34416400-34416800	Enhancers	HepG2	liver
9	chr11:34416400-34417400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr11:34416400-34418400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:34416600-34417800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:34416600-34418800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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