Variant report

Variant	rs10836358
Chromosome Location	chr11:35287500-35287501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:35287259-35287560	GM12891	blood:	n/a	n/a
2	TCF7L2	chr11:35287443-35287586	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SLC1A2	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10128586	0.81[CEU][hapmap]
rs10488813	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10836343	0.81[CEU][hapmap]
rs10836347	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10836349	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836352	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836353	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033031	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11033034	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033039	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033041	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11033042	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033043	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364027	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12575005	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1570216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3812778	0.93[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503504	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4508184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56193087	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67384276	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7104662	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122374	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72638195	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270200-35292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
5	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:35282400-35289200	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:35282400-35296600	Weak transcription	Aorta	Aorta
9	chr11:35282600-35288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:35282600-35296800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:35283000-35289400	Weak transcription	NHDF-Ad	bronchial
12	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:35283800-35288400	Weak transcription	NHLF	lung
14	chr11:35284600-35296600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:35284600-35300800	Weak transcription	Brain Angular Gyrus	brain
16	chr11:35284800-35296600	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:35285200-35287600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:35285400-35287600	Strong transcription	Brain Germinal Matrix	brain
19	chr11:35285400-35287800	Strong transcription	Fetal Brain Female	brain
20	chr11:35285400-35288000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr11:35285800-35289800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:35285800-35308800	Weak transcription	Gastric	stomach
23	chr11:35286000-35289600	Enhancers	Primary hematopoietic stem cells	blood
24	chr11:35286400-35293800	Weak transcription	Brain Anterior Caudate	brain
25	chr11:35286800-35287600	Strong transcription	Liver	Liver
26	chr11:35287000-35288000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:35287200-35287600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:35287200-35287800	Enhancers	Fetal Thymus	thymus
29	chr11:35287200-35288800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:35287200-35289600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:35287400-35287600	Enhancers	HSMMtube	muscle
32	chr11:35287400-35288000	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:35287400-35288400	Weak transcription	Pancreas	Pancrea
34	chr11:35287400-35289800	Enhancers	HSMM	muscle

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