Variant report

Variant	rs12364027
Chromosome Location	chr11:35257161-35257162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35256103..35261501-chr11:35384186..35388588,8	MCF-7	breast:
2	chr11:35121498..35123460-chr11:35254836..35257289,2	K562	blood:
3	chr11:35253589..35256594-chr11:35257104..35259626,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10444271	1.00[YRI][hapmap]
rs10488813	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10836347	0.86[CEU][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10836349	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836352	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836353	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836358	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11033031	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs11033034	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033039	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033041	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033042	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033043	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11033071	1.00[YRI][hapmap]
rs12360706	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12575005	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1570216	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16927292	1.00[YRI][hapmap]
rs3794097	1.00[YRI][hapmap]
rs3812778	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829280	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3891872	1.00[YRI][hapmap]
rs4083481	1.00[YRI][hapmap]
rs41525047	1.00[YRI][hapmap]
rs4503504	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4508184	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56193087	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67384276	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7104662	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7122374	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72638195	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv897217	chr11:35241989-35257316	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv897218	chr11:35241989-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv897219	chr11:35242907-35257316	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv897220	chr11:35242907-35261374	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv897221	chr11:35242907-35265444	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv897222	chr11:35244044-35261374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35233400-35259600	Weak transcription	Liver	Liver
2	chr11:35236800-35259600	Weak transcription	Psoas Muscle	Psoas
3	chr11:35237000-35259600	Weak transcription	HUVEC	blood vessel
4	chr11:35239200-35257600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:35241200-35259600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:35243600-35258200	Weak transcription	GM12878-XiMat	blood
7	chr11:35245400-35259600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:35247000-35258000	Weak transcription	Colonic Mucosa	Colon
9	chr11:35247000-35263200	Weak transcription	HSMMtube	muscle
10	chr11:35247200-35257600	Weak transcription	Thymus	Thymus
11	chr11:35251400-35259400	Weak transcription	Left Ventricle	heart
12	chr11:35251400-35259800	Weak transcription	Gastric	stomach
13	chr11:35252000-35257800	Weak transcription	Pancreas	Pancrea
14	chr11:35252200-35257400	Weak transcription	Stomach Mucosa	stomach
15	chr11:35252200-35258000	Weak transcription	Placenta	Placenta
16	chr11:35252200-35259400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:35252400-35258600	Weak transcription	Fetal Lung	lung
18	chr11:35252400-35259400	Weak transcription	Lung	lung
19	chr11:35252600-35257400	Weak transcription	Fetal Thymus	thymus
20	chr11:35253000-35257400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:35253000-35258000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:35253000-35259400	Weak transcription	Adipose Nuclei	Adipose
23	chr11:35253000-35260400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:35253200-35257200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:35253200-35257400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:35253200-35257600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:35253200-35257800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:35253400-35257200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:35253400-35259400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:35253600-35257400	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr11:35253600-35257600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:35253800-35257400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:35253800-35257800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:35253800-35257800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:35253800-35257800	Weak transcription	Osteobl	bone
36	chr11:35253800-35258000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:35254000-35259400	Weak transcription	Brain Substantia Nigra	brain
38	chr11:35254600-35257200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:35254600-35257600	Weak transcription	HSMM	muscle
40	chr11:35254600-35257800	Weak transcription	Primary B cells from cord blood	blood
41	chr11:35254600-35264000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:35254600-35264000	Weak transcription	NHLF	lung
43	chr11:35255000-35257800	Weak transcription	Aorta	Aorta
44	chr11:35255200-35257800	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr11:35255400-35266800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:35255600-35257400	Weak transcription	NHDF-Ad	bronchial
47	chr11:35255600-35259600	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:35255600-35260800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:35255800-35258800	Enhancers	Dnd41	blood
50	chr11:35256000-35257600	Enhancers	Primary T helper cells PMA-I stimulated	--

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