Variant report

Variant	rs10836567
Chromosome Location	chr11:36506054-36506055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRAF6-2	chr11:36505323-36508995	NONHSAT018827

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1046864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033641	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033644	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11033647	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033650	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033651	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601211	1.00[MEX][hapmap]
rs12294785	0.83[CEU][hapmap]
rs2201845	0.91[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs2303439	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs331457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs331459	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs331463	0.91[EUR][1000 genomes]
rs44883	0.83[CEU][hapmap]
rs4755453	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs502243	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5030403	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs5030409	0.91[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs5030437	1.00[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs5030445	1.00[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs5030470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5030472	0.91[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs5030482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5030485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5030486	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs540386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs552140	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7109169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111402	0.83[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap]
rs7127484	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927299	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs890258	0.83[TSI][hapmap]
rs981981	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981982	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36471800-36506800	Weak transcription	Gastric	stomach
2	chr11:36471800-36506800	Weak transcription	Pancreas	Pancrea
3	chr11:36474800-36511000	Weak transcription	Fetal Kidney	kidney
4	chr11:36478200-36508800	Weak transcription	Fetal Brain Female	brain
5	chr11:36478600-36506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:36478800-36510400	Weak transcription	Right Ventricle	heart
7	chr11:36478800-36512200	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:36481800-36508600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:36484400-36506800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:36485800-36506600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:36488800-36507400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:36489200-36510600	Weak transcription	Colonic Mucosa	Colon
13	chr11:36490000-36530400	Weak transcription	Esophagus	oesophagus
14	chr11:36491000-36511200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:36492600-36506400	Weak transcription	HSMMtube	muscle
16	chr11:36492600-36506800	Weak transcription	Aorta	Aorta
17	chr11:36492600-36506800	Weak transcription	Right Atrium	heart
18	chr11:36493600-36506800	Weak transcription	Spleen	Spleen
19	chr11:36494000-36507000	Weak transcription	Psoas Muscle	Psoas
20	chr11:36498600-36506800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:36499000-36509000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:36499200-36512800	Weak transcription	Fetal Lung	lung
23	chr11:36499800-36506800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr11:36500400-36506800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:36500400-36506800	Weak transcription	NHDF-Ad	bronchial
26	chr11:36500600-36506600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:36500600-36506800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:36500800-36509600	Weak transcription	Brain Angular Gyrus	brain
29	chr11:36500800-36522400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:36501600-36506800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:36501800-36506800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:36502200-36523400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:36502400-36506800	Weak transcription	Lung	lung
34	chr11:36502600-36509200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:36503200-36506600	Weak transcription	Placenta	Placenta
36	chr11:36503400-36506800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:36503400-36509000	Weak transcription	GM12878-XiMat	blood
38	chr11:36503600-36510200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:36503800-36506800	Weak transcription	A549	lung
40	chr11:36504000-36506800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr11:36504200-36506800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr11:36504200-36506800	Weak transcription	HUVEC	blood vessel
43	chr11:36504200-36508200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:36504400-36510600	Weak transcription	K562	blood
45	chr11:36504400-36511000	Weak transcription	Hela-S3	cervix
46	chr11:36504400-36524000	Weak transcription	Stomach Mucosa	stomach
47	chr11:36504600-36506800	Weak transcription	Small Intestine	intestine
48	chr11:36504800-36506400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:36504800-36508200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:36504800-36508400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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