Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:45838111..45839988-chr11:45841700..45845472,4	K562	blood:
2	chr11:45841559..45843906-chr11:45850042..45852854,2	K562	blood:
3	chr11:45837232..45839934-chr11:45842707..45845074,2	K562	blood:
4	chr11:45842712..45845361-chr11:45847881..45849667,2	MCF-7	breast:
5	chr11:45841387..45844353-chr11:45869079..45870612,2	MCF-7	breast:
6	chr11:45833001..45835020-chr11:45841980..45844453,2	K562	blood:

Variant related genes	Relation type
ENSG00000255447	Chromatin interaction

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10742769	0.81[CHB][hapmap]
rs11038673	0.89[YRI][hapmap]
rs11038677	0.82[ASN][1000 genomes]
rs1139266	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs2002244	0.87[ASN][1000 genomes]
rs2090602	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2292912	0.84[JPT][hapmap]
rs3824872	0.81[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs4756037	0.82[ASN][1000 genomes]
rs6798	0.82[GIH][hapmap]
rs7115967	0.87[CHD][hapmap]
rs7951225	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10838521	CRY2	cis	multi-tissue	Pritchard

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
2	chr11:45833800-45845400	Weak transcription	Ovary	ovary
3	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:45834000-45845400	Weak transcription	Fetal Intestine Large	intestine
5	chr11:45834000-45845400	Weak transcription	Left Ventricle	heart
6	chr11:45834400-45845000	Weak transcription	Fetal Lung	lung
7	chr11:45834400-45845400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:45834400-45845600	Weak transcription	Gastric	stomach
9	chr11:45834600-45845400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:45834600-45845400	Weak transcription	Lung	lung
11	chr11:45835000-45843200	Weak transcription	K562	blood
12	chr11:45835000-45844600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:45835000-45845400	Weak transcription	Dnd41	blood
14	chr11:45837600-45845400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:45837600-45845400	Weak transcription	Fetal Kidney	kidney
16	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:45838000-45845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:45840600-45844800	Weak transcription	Fetal Heart	heart
19	chr11:45840800-45843400	Weak transcription	Placenta	Placenta
20	chr11:45841200-45845000	Weak transcription	GM12878-XiMat	blood
21	chr11:45842800-45845400	Weak transcription	Fetal Muscle Leg	muscle

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