Variant report

Variant	rs11038673
Chromosome Location	chr11:45846619-45846620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10838521	0.89[YRI][hapmap]
rs11038672	0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11607883	0.83[JPT][hapmap]
rs12805422	0.90[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2090602	0.89[YRI][hapmap]
rs6485644	0.90[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs7105751	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7112505	0.90[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
2	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:45845600-45847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:45845800-45847400	Weak transcription	K562	blood
6	chr11:45845800-45847600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:45845800-45848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:45845800-45848000	Weak transcription	Gastric	stomach
9	chr11:45845800-45848000	Weak transcription	Lung	lung
10	chr11:45845800-45850400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:45845800-45869000	Weak transcription	Right Atrium	heart
12	chr11:45846000-45855800	Weak transcription	Ovary	ovary
13	chr11:45846600-45848000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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