Variant report

Variant	rs11038672
Chromosome Location	chr11:45846498-45846499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45834030..45839103-chr11:45846096..45849299,4	K562	blood:
2	chr11:45845122..45847202-chr11:45850154..45851796,2	MCF-7	breast:
3	chr11:45844416..45847085-chr11:45867147..45869088,2	K562	blood:
4	chr11:45845665..45849726-chr11:45853081..45856050,3	K562	blood:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction
ENSG00000255447	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10838524	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11038673	0.90[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes]
rs11038678	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11038694	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11605924	0.93[CEU][hapmap];0.82[CHB][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11607182	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11607883	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12419690	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12794698	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12805422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12807179	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1401419	1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34043764	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6485644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485645	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6485646	0.93[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7105751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115753	0.81[EUR][1000 genomes]
rs7121611	0.92[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7933420	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7945565	0.89[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7945689	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
2	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:45843400-45846600	Enhancers	Placenta	Placenta
5	chr11:45845600-45847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:45845800-45847400	Weak transcription	K562	blood
7	chr11:45845800-45847600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:45845800-45848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45845800-45848000	Weak transcription	Gastric	stomach
10	chr11:45845800-45848000	Weak transcription	Lung	lung
11	chr11:45845800-45850400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:45845800-45869000	Weak transcription	Right Atrium	heart
13	chr11:45846000-45855800	Weak transcription	Ovary	ovary

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