Variant report

Variant	rs7933420
Chromosome Location	chr11:45896797-45896798
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45890946..45892640-chr11:45894531..45897564,3	K562	blood:
2	chr11:45886181..45890653-chr11:45894511..45897195,4	K562	blood:
3	chr11:45895385..45897283-chr11:45921061..45924011,2	MCF-7	breast:
4	chr11:45896752..45899624-chr11:45938849..45941490,2	K562	blood:
5	chr11:45896206..45898084-chr11:45902278..45904901,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000121653	Chromatin interaction
ENSG00000121680	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10838524	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11038672	0.93[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11038678	0.85[AMR][1000 genomes]
rs11038694	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605924	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607182	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11607883	0.92[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs12419690	0.83[EUR][1000 genomes]
rs12794698	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12805422	1.00[YRI][hapmap]
rs12807179	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1401419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34043764	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6485644	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6485645	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6485646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7105751	0.92[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7112505	0.92[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7115753	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7121611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7945565	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7945689	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45874200-45904200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr11:45875200-45905600	Strong transcription	Primary T cells from cord blood	blood
3	chr11:45875800-45904200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr11:45876400-45904200	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:45876800-45900200	Strong transcription	Primary B cells from cord blood	blood
6	chr11:45876800-45903600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr11:45876800-45904600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:45877400-45899800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
9	chr11:45877400-45900200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:45877400-45903800	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr11:45877400-45904200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:45879200-45901200	Weak transcription	A549	lung
13	chr11:45880000-45903400	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr11:45880200-45904600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:45880400-45904200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:45880600-45904600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:45881200-45905200	Strong transcription	Fetal Intestine Large	intestine
18	chr11:45881800-45900200	Strong transcription	Brain Germinal Matrix	brain
19	chr11:45881800-45900400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:45882000-45900000	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:45882000-45900200	Strong transcription	Duodenum Mucosa	Duodenum
22	chr11:45882000-45902000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:45882000-45904800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:45882200-45900000	Strong transcription	Ovary	ovary
25	chr11:45882200-45900200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:45882200-45900400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:45882400-45897600	Strong transcription	Fetal Lung	lung
28	chr11:45882400-45900200	Strong transcription	Spleen	Spleen
29	chr11:45882600-45900000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr11:45882600-45900000	Strong transcription	Right Ventricle	heart
31	chr11:45882600-45902000	Strong transcription	Fetal Stomach	stomach
32	chr11:45882600-45902600	Strong transcription	Fetal Muscle Leg	muscle
33	chr11:45882600-45902800	Weak transcription	Right Atrium	heart
34	chr11:45882600-45905200	Strong transcription	Liver	Liver
35	chr11:45882800-45902600	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:45883000-45901600	Strong transcription	Colon Smooth Muscle	Colon
37	chr11:45883400-45902400	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:45883800-45897000	Strong transcription	Left Ventricle	heart
39	chr11:45883800-45901400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr11:45883800-45901600	Strong transcription	Rectal Smooth Muscle	rectum
41	chr11:45883800-45905000	Strong transcription	Placenta	Placenta
42	chr11:45885800-45902200	Strong transcription	Adipose Nuclei	Adipose
43	chr11:45885800-45906400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:45886800-45900000	Strong transcription	Brain Substantia Nigra	brain
45	chr11:45886800-45904000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:45887800-45899800	Strong transcription	Lung	lung
47	chr11:45888800-45899600	Strong transcription	Aorta	Aorta
48	chr11:45890600-45896800	Weak transcription	Fetal Heart	heart
49	chr11:45892400-45897600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:45893000-45897200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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