Variant report

Variant	rs11607182
Chromosome Location	chr11:45838114-45838115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45836782..45839612-chr11:45867458..45870636,4	MCF-7	breast:
2	chr11:45837750..45841192-chr11:45868831..45870857,3	MCF-7	breast:
3	chr11:45837232..45839934-chr11:45842707..45845074,2	K562	blood:
4	chr11:45838111..45839988-chr11:45841700..45845472,4	K562	blood:

Variant related genes	Relation type
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10838516	0.85[AFR][1000 genomes]
rs10838524	0.81[EUR][1000 genomes]
rs11038672	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11038678	0.96[AMR][1000 genomes]
rs11038694	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11605924	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11607883	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12416943	0.85[AFR][1000 genomes]
rs12419690	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12794698	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12805422	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12807179	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1401419	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34043764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6485644	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6485645	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6485646	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7105751	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7112505	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7121611	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7933420	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7945565	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945689	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv897315	chr11:45817637-45838926	Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45832000-45838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:45832200-45839600	Weak transcription	Fetal Heart	heart
3	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
4	chr11:45833800-45838200	Weak transcription	GM12878-XiMat	blood
5	chr11:45833800-45838600	Weak transcription	Primary B cells from cord blood	blood
6	chr11:45833800-45841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:45833800-45845400	Weak transcription	Ovary	ovary
8	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:45834000-45838200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:45834000-45845400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:45834000-45845400	Weak transcription	Left Ventricle	heart
12	chr11:45834200-45838800	Weak transcription	Colonic Mucosa	Colon
13	chr11:45834200-45839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:45834200-45839000	Weak transcription	Spleen	Spleen
15	chr11:45834200-45839200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:45834400-45838200	Weak transcription	Liver	Liver
17	chr11:45834400-45838200	Weak transcription	Brain Germinal Matrix	brain
18	chr11:45834400-45838200	Weak transcription	Esophagus	oesophagus
19	chr11:45834400-45838200	Weak transcription	Pancreas	Pancrea
20	chr11:45834400-45839200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:45834400-45845000	Weak transcription	Fetal Lung	lung
22	chr11:45834400-45845400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:45834400-45845600	Weak transcription	Gastric	stomach
24	chr11:45834600-45839600	Weak transcription	Placenta	Placenta
25	chr11:45834600-45845400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:45834600-45845400	Weak transcription	Lung	lung
27	chr11:45834800-45838200	Weak transcription	Fetal Brain Female	brain
28	chr11:45835000-45838200	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:45835000-45843200	Weak transcription	K562	blood
30	chr11:45835000-45844600	Weak transcription	Fetal Intestine Small	intestine
31	chr11:45835000-45845400	Weak transcription	Dnd41	blood
32	chr11:45835200-45838400	Weak transcription	Fetal Stomach	stomach
33	chr11:45837200-45838400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr11:45837200-45838400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr11:45837200-45838400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr11:45837200-45838400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:45837200-45839000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr11:45837200-45839600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr11:45837400-45838400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:45837400-45838600	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr11:45837600-45838200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:45837600-45838200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:45837600-45838200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr11:45837600-45845400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:45837600-45845400	Weak transcription	Fetal Kidney	kidney
46	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:45838000-45845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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