Variant report

Variant	rs11607883
Chromosome Location	chr11:45839709-45839710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45837750..45841192-chr11:45868831..45870857,3	MCF-7	breast:
2	chr11:45837232..45839934-chr11:45842707..45845074,2	K562	blood:
3	chr11:45838111..45839988-chr11:45841700..45845472,4	K562	blood:
4	chr11:45833466..45835015-chr11:45838318..45840178,2	K562	blood:

Variant related genes	Relation type
ENSG00000255447	Chromatin interaction
ENSG00000121671	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10838516	0.81[AFR][1000 genomes]
rs10838524	0.95[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs11038672	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11038673	0.83[JPT][hapmap]
rs11038678	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11038694	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11605924	0.92[CEU][hapmap];0.87[GIH][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11607182	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12416943	0.81[AFR][1000 genomes]
rs12419690	0.84[EUR][1000 genomes]
rs12794698	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12805422	0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12807179	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1401419	1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34043764	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6485644	1.00[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6485645	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6485646	0.92[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7105751	1.00[CEU][hapmap];0.88[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7112505	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7121611	0.92[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7933420	0.86[EUR][1000 genomes]
rs7935034	0.82[AFR][1000 genomes]
rs7945565	0.89[CEU][hapmap];0.95[GIH][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7945689	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897314	chr11:45816020-45965129	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11607883	PEX16	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45833600-45848000	Weak transcription	Right Ventricle	heart
2	chr11:45833800-45841800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:45833800-45845400	Weak transcription	Ovary	ovary
4	chr11:45833800-45850000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:45834000-45845400	Weak transcription	Fetal Intestine Large	intestine
6	chr11:45834000-45845400	Weak transcription	Left Ventricle	heart
7	chr11:45834400-45845000	Weak transcription	Fetal Lung	lung
8	chr11:45834400-45845400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:45834400-45845600	Weak transcription	Gastric	stomach
10	chr11:45834600-45845400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:45834600-45845400	Weak transcription	Lung	lung
12	chr11:45835000-45843200	Weak transcription	K562	blood
13	chr11:45835000-45844600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:45835000-45845400	Weak transcription	Dnd41	blood
15	chr11:45837600-45845400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:45837600-45845400	Weak transcription	Fetal Kidney	kidney
17	chr11:45837600-45848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:45838000-45845400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:45838200-45839800	Enhancers	GM12878-XiMat	blood
20	chr11:45838200-45841200	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:45838400-45841200	Weak transcription	Fetal Muscle Leg	muscle
22	chr11:45838600-45840800	Enhancers	Primary B cells from cord blood	blood
23	chr11:45839200-45839800	Enhancers	Adipose Nuclei	Adipose
24	chr11:45839600-45840600	Enhancers	Fetal Heart	heart
25	chr11:45839600-45840800	Enhancers	Placenta	Placenta

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