Variant report

Variant	rs10839983
Chromosome Location	chr11:8174763-8174764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10769880	0.92[TSI][hapmap]
rs11041759	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11820921	0.80[EUR][1000 genomes]
rs11826236	0.92[TSI][hapmap]
rs12098876	0.81[AMR][1000 genomes]
rs1406093	0.91[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1528128	0.92[TSI][hapmap]
rs1528133	1.00[TSI][hapmap]
rs16936374	1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs16936464	0.92[TSI][hapmap]
rs2272384	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3750954	0.91[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3750956	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3930849	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4758043	0.91[MEX][hapmap]
rs4758045	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758295	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4758298	0.92[TSI][hapmap]
rs4758301	0.92[TSI][hapmap]
rs56296484	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57845267	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59123180	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6578933	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66638701	0.80[EUR][1000 genomes]
rs66904272	0.80[EUR][1000 genomes]
rs67381251	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs68084728	0.81[AMR][1000 genomes]
rs68154852	0.81[AMR][1000 genomes]
rs7113581	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116667	0.91[MEX][hapmap];0.92[TSI][hapmap]
rs7481121	0.90[JPT][hapmap]
rs9783349	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8149800-8179600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:8156000-8189800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:8160800-8188600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:8162000-8189400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:8162400-8183200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:8168800-8174800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:8169000-8175000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:8169800-8174800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:8169800-8178600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:8171800-8177400	Weak transcription	Psoas Muscle	Psoas
11	chr11:8173800-8175800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:8173800-8177400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:8174200-8177400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:8174600-8175400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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