Variant report

Variant	rs4758043
Chromosome Location	chr11:8137353-8137354
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10769880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs10839983	0.91[MEX][hapmap]
rs11041759	0.91[MEX][hapmap];0.80[AMR][1000 genomes]
rs11820921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11825426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11825474	0.91[ASN][1000 genomes]
rs11826236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12098876	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1406093	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1528128	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1528133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16935778	0.86[JPT][hapmap]
rs16935797	0.86[CHB][hapmap]
rs16936374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16936453	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16936464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs2884897	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750954	0.91[MEX][hapmap]
rs3812761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4758291	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.87[ASN][1000 genomes]
rs4758292	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4758293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4758296	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758297	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758299	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[ASN][1000 genomes]
rs55734038	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55800727	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55990541	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56069405	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56151106	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296484	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56359962	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56391723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58468974	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59196234	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59304961	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59649611	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59779009	0.91[ASN][1000 genomes]
rs60126747	0.91[ASN][1000 genomes]
rs6578933	0.80[AMR][1000 genomes]
rs66638701	0.91[ASN][1000 genomes]
rs66675297	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66849637	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66904272	0.91[ASN][1000 genomes]
rs67163850	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67311429	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67381251	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67538440	0.91[ASN][1000 genomes]
rs67616239	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67646462	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67651384	0.91[ASN][1000 genomes]
rs67738066	0.91[ASN][1000 genomes]
rs67800627	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67807225	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67923068	0.91[ASN][1000 genomes]
rs68084728	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68154852	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116667	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849307	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72849320	0.86[AMR][1000 genomes]
rs7480804	0.86[CHB][hapmap]
rs7939737	0.86[CHB][hapmap]
rs9783349	0.91[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8117000-8157600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:8120600-8148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:8124000-8139600	Weak transcription	Spleen	Spleen
4	chr11:8126400-8160600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:8128800-8162600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:8132400-8138200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:8132400-8148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8132400-8154600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:8132400-8157200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:8132400-8157200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:8132400-8159600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:8132600-8138000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:8132600-8157600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:8132600-8157600	Weak transcription	Ovary	ovary
15	chr11:8132600-8158000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:8132600-8160800	Weak transcription	Esophagus	oesophagus
17	chr11:8132600-8172200	Weak transcription	Pancreas	Pancrea
18	chr11:8133600-8137400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:8133600-8157600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr11:8133600-8157800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:8133600-8162800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:8135000-8149400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:8135400-8138000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:8136400-8138000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
25	chr11:8136800-8138200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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