Variant report

Variant	rs11826236
Chromosome Location	chr11:8132301-8132302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10769880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10839983	0.92[TSI][hapmap]
rs11041759	0.92[TSI][hapmap]
rs11820921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11825426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11825474	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12098876	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1406093	0.82[TSI][hapmap]
rs1528128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1528133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16935778	0.86[JPT][hapmap]
rs16935797	0.86[CHB][hapmap]
rs16936374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16936453	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16936464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2884897	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3750954	0.92[TSI][hapmap]
rs3812761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4758043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758291	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes]
rs4758292	0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4758293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4758296	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758297	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758299	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55734038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55800727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55990541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56069405	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56151106	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296484	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56359962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56391723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58468974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59196234	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59304961	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59649611	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59779009	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60126747	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66638701	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66675297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66849637	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66904272	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67163850	0.91[ASN][1000 genomes]
rs67311429	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67381251	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67538440	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67616239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67646462	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67651384	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67738066	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67800627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67807225	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67923068	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs68084728	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68154852	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849307	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7480804	0.86[CHB][hapmap]
rs7939737	0.86[CHB][hapmap]
rs9783349	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8114400-8133600	Weak transcription	Liver	Liver
2	chr11:8117000-8157600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:8118000-8132600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:8118200-8132400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:8120400-8132400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:8120600-8148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:8120800-8133200	Weak transcription	NHDF-Ad	bronchial
8	chr11:8123000-8132400	Weak transcription	Fetal Brain Male	brain
9	chr11:8123600-8132400	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:8124000-8135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:8124000-8139600	Weak transcription	Spleen	Spleen
12	chr11:8124200-8136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:8124400-8135400	Weak transcription	Gastric	stomach
14	chr11:8124600-8133800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr11:8124800-8132800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:8124800-8136000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:8126200-8133400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:8126400-8160600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr11:8126800-8135600	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:8128200-8132400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr11:8128200-8133600	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr11:8128400-8133600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:8128400-8135000	Weak transcription	Left Ventricle	heart
24	chr11:8128600-8132800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:8128800-8162600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:8129400-8133600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:8129400-8134600	Weak transcription	Right Ventricle	heart
28	chr11:8129800-8133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:8130200-8132600	Strong transcription	Brain Anterior Caudate	brain
30	chr11:8130200-8133400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:8130600-8132400	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:8130600-8132400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:8130600-8132600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:8130800-8132600	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr11:8130800-8132600	Enhancers	Fetal Intestine Small	intestine
36	chr11:8131000-8132400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:8131000-8132400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:8131000-8132400	Strong transcription	Stomach Smooth Muscle	stomach
39	chr11:8131000-8132600	Enhancers	Fetal Intestine Large	intestine
40	chr11:8131000-8132600	Strong transcription	Pancreas	Pancrea
41	chr11:8131000-8132800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:8131200-8132400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:8131200-8132400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:8131200-8132600	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr11:8131200-8132800	Enhancers	Psoas Muscle	Psoas
46	chr11:8131400-8132600	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:8131400-8132600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:8131400-8132600	Strong transcription	Aorta	Aorta
49	chr11:8131400-8133600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:8131600-8132400	Strong transcription	H9 Cell Line	embryonic stem cell

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