Variant report

Variant	rs59649611
Chromosome Location	chr11:8179479-8179480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11820921	0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825426	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825474	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826236	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12098876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1528128	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528133	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16936374	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936453	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16936464	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884897	0.88[ASN][1000 genomes]
rs3812761	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4758043	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758291	0.84[ASN][1000 genomes]
rs4758292	0.88[ASN][1000 genomes]
rs4758293	0.88[ASN][1000 genomes]
rs4758296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758298	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758299	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758301	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55734038	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55800727	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55990541	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56069405	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56151106	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56296484	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56359962	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56391723	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58468974	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59196234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59304961	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59779009	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60126747	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66638701	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66675297	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66849637	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66904272	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67163850	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67311429	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67381251	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67538440	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67616239	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67646462	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67651384	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67738066	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67800627	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67807225	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67923068	1.00[ASN][1000 genomes]
rs68084728	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68154852	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116667	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72849307	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72849320	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1048537	chr11:8137353-8196203	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv896981	chr11:8152080-8227964	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1054339	chr11:8153582-8263173	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8149800-8179600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:8156000-8189800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:8160800-8188600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:8162000-8189400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:8162400-8183200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:8175600-8189400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:8177400-8180000	Enhancers	Psoas Muscle	Psoas
8	chr11:8177400-8180200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:8178200-8179600	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:8179000-8189400	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:8179200-8189600	Weak transcription	Right Ventricle	heart
12	chr11:8179400-8179800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:8179400-8188800	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links