Variant report

Variant	rs10840220
Chromosome Location	chr11:9390988-9390989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9383348..9385949-chr11:9390931..9392449,2	MCF-7	breast:
2	chr11:9385773..9387621-chr11:9390290..9392056,4	K562	blood:
3	chr11:9381627..9391078-chr11:9403280..9408916,26	K562	blood:
4	chr11:9381937..9391078-chr11:9402547..9409222,25	K562	blood:

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10437595	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10437596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10437665	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10840218	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10840219	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11042311	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042321	0.82[ASN][1000 genomes]
rs11603265	1.00[ASN][1000 genomes]
rs12291369	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12795346	0.85[ASN][1000 genomes]
rs12795379	0.92[ASN][1000 genomes]
rs35484677	0.84[EUR][1000 genomes]
rs4910045	0.81[EUR][1000 genomes]
rs4910046	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4910047	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4910049	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4910050	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910458	0.88[EUR][1000 genomes]
rs4910459	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4910460	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4910461	0.89[EUR][1000 genomes]
rs6486290	1.00[ASN][1000 genomes]
rs7105373	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115821	0.84[EUR][1000 genomes]
rs7394742	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7395630	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7944535	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7949053	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9971433	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9971484	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10840220	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386800-9391200	Weak transcription	Fetal Brain Male	brain
2	chr11:9386800-9394200	Weak transcription	HepG2	liver
3	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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