Variant report

Variant	rs7105373
Chromosome Location	chr11:9386936-9386937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:9334051..9337836-chr11:9384228..9387561,5	MCF-7	breast:
2	chr11:9385773..9387621-chr11:9390290..9392056,4	K562	blood:
3	chr11:9285276..9286981-chr11:9384842..9387352,3	MCF-7	breast:
4	chr11:9385802..9387665-chr11:9394005..9395643,2	K562	blood:
5	chr11:9384653..9387328-chr11:9479697..9482338,3	MCF-7	breast:
6	chr11:9385385..9387133-chr11:9397902..9400068,2	MCF-7	breast:
7	chr11:9381559..9387995-chr11:9480641..9484889,12	K562	blood:
8	chr11:9384832..9388447-chr11:9401739..9404383,5	MCF-7	breast:
9	chr11:9383572..9387718-chr11:9404633..9407849,8	MCF-7	breast:
10	chr11:9384745..9387627-chr11:9387975..9389794,3	K562	blood:
11	chr11:9385882..9388883-chr11:9391804..9395643,5	K562	blood:
12	chr11:9331410..9339611-chr11:9380876..9388176,24	K562	blood:
13	chr11:9386140..9386989-chr19:49375820..49376486,2	Hela-S3	cervix:
14	chr11:9382569..9389533-chr11:9404674..9410600,16	MCF-7	breast:
15	chr11:9367453..9371339-chr11:9383916..9387622,3	K562	blood:
16	chr11:9381627..9391078-chr11:9403280..9408916,26	K562	blood:
17	chr11:9324025..9326025-chr11:9386165..9388976,2	K562	blood:
18	chr11:8729818..8732342-chr11:9384547..9387527,2	MCF-7	breast:
19	chr11:9368736..9371339-chr11:9384685..9387958,4	K562	blood:
20	chr11:9331719..9338309-chr11:9381508..9387747,16	K562	blood:
21	chr11:9384654..9388171-chr11:9393379..9396078,3	MCF-7	breast:
22	chr11:9381937..9391078-chr11:9402547..9409222,25	K562	blood:
23	chr11:9384002..9387558-chr11:9481143..9484126,7	K562	blood:
24	chr11:9339910..9342250-chr11:9383907..9387311,3	K562	blood:
25	chr11:9386147..9387677-chr11:9442254..9444555,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205339	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000254884	Chromatin interaction
ENSG00000184014	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000166471	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10437595	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10437596	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10437665	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10770024	0.84[ASN][1000 genomes]
rs10840218	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10840219	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10840220	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10840222	0.83[ASN][1000 genomes]
rs10840224	0.83[ASN][1000 genomes]
rs11042311	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12291369	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35484677	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4243948	0.83[ASN][1000 genomes]
rs4362147	0.84[ASN][1000 genomes]
rs4409822	0.82[ASN][1000 genomes]
rs4471419	0.84[ASN][1000 genomes]
rs4525241	0.81[ASN][1000 genomes]
rs4582976	0.84[ASN][1000 genomes]
rs4625466	0.84[ASN][1000 genomes]
rs4910046	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4910047	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4910048	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4910049	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4910050	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4910458	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4910459	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910460	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910461	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115821	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7394742	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7395630	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930205	0.85[ASN][1000 genomes]
rs7944535	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946263	0.97[ASN][1000 genomes]
rs7949053	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7952145	0.97[ASN][1000 genomes]
rs9971433	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9971484	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv508617	chr11:9314027-9408562	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	nsv975322	chr11:9363750-9395226	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7105373	IPO7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9386400-9387000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:9386600-9387000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr11:9386600-9387000	Enhancers	Placenta	Placenta
4	chr11:9386600-9387000	Enhancers	Fetal Thymus	thymus
5	chr11:9386600-9387000	Enhancers	Thymus	Thymus
6	chr11:9386600-9388800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:9386600-9389000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:9386600-9389000	Weak transcription	Fetal Heart	heart
9	chr11:9386600-9389200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:9386800-9387000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr11:9386800-9387000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:9386800-9387200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:9386800-9387200	Enhancers	Dnd41	blood
14	chr11:9386800-9388600	Weak transcription	K562	blood
15	chr11:9386800-9388800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:9386800-9388800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:9386800-9388800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:9386800-9389200	Weak transcription	A549	lung
19	chr11:9386800-9391200	Weak transcription	Fetal Brain Male	brain
20	chr11:9386800-9394200	Weak transcription	HepG2	liver
21	chr11:9386800-9406000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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